Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n01r
         (761 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   2.7  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   2.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   4.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle nu...    22   6.1  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   8.1  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    21   8.1  

>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
          protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 80 LAGDVRSGSCYNV*SCNG 27
          + GD  SG  YN+ +C+G
Sbjct: 40 VCGDFSSGKHYNIFACDG 57


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
          protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 80 LAGDVRSGSCYNV*SCNG 27
          + GD  SG  YN+ +C+G
Sbjct: 40 VCGDFSSGKHYNIFACDG 57


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 67  TSPANTVRIAILHFDND 117
           T PA+ V IA L+ DND
Sbjct: 540 TLPASAVGIAWLYVDND 556


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 427 TLITTHVITPKC 462
           T IT H+ TPKC
Sbjct: 475 TWITLHIWTPKC 486


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 427 TLITTHVITPKC 462
           T IT H+ TPKC
Sbjct: 475 TWITLHIWTPKC 486


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 427 TLITTHVITPKC 462
           T IT H+ TPKC
Sbjct: 475 TWITLHIWTPKC 486


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = +1

Query: 427 TLITTHVITPKC 462
           T IT H+ TPKC
Sbjct: 475 TWITLHIWTPKC 486


>AM295014-1|CAL25729.1|  407|Tribolium castaneum ultraspiracle
           nuclear receptor protein.
          Length = 407

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 89  LTVLAGDVRSGSCYNV*SCNG 27
           L  + GD  SG  Y V SC G
Sbjct: 85  LCSICGDRASGKHYGVYSCEG 105


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 89  LTVLAGDVRSGSCYNV*SCNG 27
           L ++ GD  SG  YN  +C G
Sbjct: 187 LCLVCGDRASGYHYNALTCEG 207


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = +3

Query: 402 FNKWNRYLYFNHYT 443
           FNKWN++  +++++
Sbjct: 61  FNKWNQFRSYSNFS 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,468
Number of Sequences: 336
Number of extensions: 3556
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)