Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n01r
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   6.7  
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos...    25   8.9  

>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 360 KRQRAPLYIFRSRCSDAFY*RTCV 289
           KR RAPLYI  + CS  ++ R+ +
Sbjct: 7   KRLRAPLYIQNAYCSKNYFYRSFI 30


>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 701

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 1/83 (1%)
 Frame = -2

Query: 745 FDQLLEDMSAAFRNLED*PLYCL*NIIVIETLKFTEINFN-VKRKYSE*PKLILCVVANI 569
           FD +L++     + L+   L      I+   L   +   N VK  +++  +L+ C   N 
Sbjct: 429 FDMVLDESLQVLKKLQTLHLSFTLGDIIPNYLTLADYLLNFVKTSFAQIYELV-CSFVNN 487

Query: 568 IDILSSQHRL*LRTKECNVIIEL 500
           + ++ S     LRT  C  I+ L
Sbjct: 488 VAVMESSSEKQLRTSRCLKIVRL 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,956,838
Number of Sequences: 5004
Number of extensions: 56932
Number of successful extensions: 95
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)