Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n01r
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0113 + 4408171-4409415,4409902-4409907                           28   7.1  
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412...    28   9.3  

>09_02_0113 + 4408171-4409415,4409902-4409907
          Length = 416

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 18/42 (42%), Positives = 22/42 (52%)
 Frame = -2

Query: 382 NASEPRL*AAARSPVHIQITLQRRVLLTYLCILKKVIKYDIY 257
           +AS  RL  AA SPV    +   R+ L YL   K  I YD+Y
Sbjct: 87  SASRGRLHPAAVSPVDASSSSSPRLSLDYLGGTKGFIIYDVY 128


>02_01_0561 +
           4120268-4120339,4121462-4121588,4121715-4121770,
           4121841-4121912,4122017-4122128,4122247-4122284,
           4122412-4122513,4122619-4122675,4122755-4122826,
           4122992-4123093,4123210-4123405,4123988-4124094,
           4124497-4124691,4124771-4124857,4124905-4124913,
           4125599-4125703,4126067-4126164,4126250-4126328,
           4126912-4127000,4127086-4127200
          Length = 629

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 748 RFDQLLEDMSAAFRNLED 695
           +F +L +D++A FRNLED
Sbjct: 609 KFQKLYDDLTAGFRNLED 626


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,225,903
Number of Sequences: 37544
Number of extensions: 298057
Number of successful extensions: 481
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 481
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)