Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n01f
         (642 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po...   248   5e-67
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    43   4e-05
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p...    43   4e-05
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    31   0.19 
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    30   0.25 
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    29   0.57 
SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase |Schizosaccha...    29   0.57 
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    29   0.75 
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    29   0.75 
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    27   3.0  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   4.0  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.3  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    25   7.0  
SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein Ndc80|...    25   9.3  

>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 619

 Score =  248 bits (607), Expect = 5e-67
 Identities = 117/199 (58%), Positives = 157/199 (78%), Gaps = 3/199 (1%)
 Frame = +3

Query: 54  SKGGLRTIAN-E*NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGD 230
           +K  +R++ N + +E R+G +F+VSGPVV A  M G +MYELVRVG+ ELVGE+IR+  D
Sbjct: 8   AKKAIRSLKNYDEHENRYGSIFSVSGPVVVAANMLGCSMYELVRVGHEELVGEVIRIHQD 67

Query: 231 MATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPK 410
             TIQVYEETSG+TVGDPV RTGKPLSVELGPG+  +I+DGIQRPLK I + +QSIYIP+
Sbjct: 68  KCTIQVYEETSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQIFDKSQSIYIPR 127

Query: 411 GINVPSLAREVDWEFNP-LNVKVGSHITGGDLYGIVHENTLVK-HRMLVPPKAKGTVTYI 584
           GIN  SL RE  W+F P  ++++G H++GGD++G V EN+L   H++++PP+A+GTVTYI
Sbjct: 128 GINTESLNREHKWDFTPNKDLRIGDHVSGGDVFGSVFENSLFNDHKIMLPPRARGTVTYI 187

Query: 585 APAGNYKVTDVVLETEFDG 641
           A AG+Y V + +LE EF+G
Sbjct: 188 AEAGSYHVDEKLLEVEFNG 206


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 5/117 (4%)
 Frame = +3

Query: 102 FGYVFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGVT 272
           +  V +++GP+V  + +      E+V +   +     G+++ + G  A +QV+E TSGV 
Sbjct: 24  YNTVNSITGPLVILDNIRRPQYNEIVNLNLPDGSVRSGQVLEVAGHKAIVQVFEGTSGVD 83

Query: 273 VGDPVLR-TGKPLSVELGPGILGSIFDGIQRPL-KDINELTQSIYIPKGINVPSLAR 437
           V    +  TG  + + +   +LG +F+G   P+ K  N L +      G  +   AR
Sbjct: 84  VRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDKGPNLLAEDYLDINGSPINPYAR 140


>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 525

 Score = 42.7 bits (96), Expect = 4e-05
 Identities = 23/73 (31%), Positives = 37/73 (50%)
 Frame = +3

Query: 222 EGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIY 401
           E  + TI + + T G+  G  V+ TG P+S+ +GPG LG I + I  P+ +   +    Y
Sbjct: 102 ENTVRTIAM-DGTEGLVRGTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDERGPIKAVKY 160

Query: 402 IPKGINVPSLARE 440
            P   + PS   +
Sbjct: 161 SPIHADAPSFEEQ 173


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 18/51 (35%), Positives = 26/51 (50%)
 Frame = -2

Query: 221 KTDNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDISEPLLILLIGDRP 69
           +T +L  E    DTD+ VHS+S    GS+  S    D  E  +I ++G  P
Sbjct: 180 RTPSLVPEHYFDDTDKSVHSKSSS--GSNSLSEASNDDLESSIIQIVGGLP 228


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 24/118 (20%), Positives = 50/118 (42%)
 Frame = +3

Query: 90  NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATIQVYEETSGV 269
           +EE    VF++   +++  ++S + +Y +V V      G +       +  Q+ E+    
Sbjct: 201 DEEDIALVFSLLNCIISYGRISSAVLYSIVEVVCRAKFGLVA---SSQSAQQIVEKLLKT 257

Query: 270 TVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREV 443
                 L + K +  E   G   +I  GIQ       ++ +S+Y  +G+ +  L R +
Sbjct: 258 ATKYEALNSLKRIMEETDEGSYIAIMGGIQIVSALFTDIPRSVYCTRGMLLGFLQRSL 315


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 288 VLDHLQLHLKFLRIPGWWPC 229
           V+D   L +  LR+P WWPC
Sbjct: 67  VVDISNLVIYALRVPNWWPC 86


>SPBPB8B6.03 ||SPAPB8B6.03, SPAPB8B6.03|acetamidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 29.1 bits (62), Expect = 0.57
 Identities = 25/108 (23%), Positives = 52/108 (48%), Gaps = 2/108 (1%)
 Frame = +3

Query: 321 GPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWEFNPLNVKVGSHITGGD 500
           G  ++ S+   + R LKDI   T+++       + S A ++D +  P+  K  SH+    
Sbjct: 264 GQELIPSVIGPMARSLKDIEFFTETV-------IASEAWKIDSKLLPIPWKNQSHLKSKK 316

Query: 501 L-YGIVHENTLVK-HRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFD 638
           L +G++  + +VK H  ++  +A   V  +     Y+V ++ +  + D
Sbjct: 317 LIFGVLKTDGIVKPHPPII--RALNEVVAVLEKSGYEVIEISIPFQKD 362


>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 14/26 (53%), Positives = 17/26 (65%)
 Frame = -3

Query: 163 ADPDIFSAVTTGPDTAKTYPNLSSFY 86
           AD  +F AV   PDTAK YPN + +Y
Sbjct: 33  ADAVVFKAVGVAPDTAK-YPNGARWY 57


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 355 IPSKMEPKIPGPSSTDKGFPVRSTGSPTVTPE 260
           IPS + P    P  T  GFP R    PT+ P+
Sbjct: 368 IPSTLPPADGVPKPTPDGFPRRFERDPTIPPD 399


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 443 NLPGQGRHVDTLGDVDGLSQLVDVLEGTLNTVKDGTQDTGTKFY*QRLSSTE 288
           +L  Q  HVD     D  S L+ +L   LN       ++G K+Y    SST+
Sbjct: 40  SLSAQQPHVD-----DQRSSLLSLLNAGLNASNQSPSNSGPKYYASHSSSTD 86


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +3

Query: 222 EGDMATIQVYEETS-GVTVGDPVLRTGKPLSVE 317
           E D A++ +   T+  +T  DPV  + KPL++E
Sbjct: 572 ENDKASVSITTTTTPSITPADPVPTSPKPLAIE 604


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/44 (34%), Positives = 18/44 (40%)
 Frame = -3

Query: 574 TVPLALGGTNILCLTRVFSCTIPYKSPPVMWDPTLTFNGLNSQS 443
           TVP     T +       S ++PY S PV   P  T N   S S
Sbjct: 412 TVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +3

Query: 258 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINEL 386
           TS +TVGD V+       + +    LGS++  +++   D+ +L
Sbjct: 375 TSNLTVGDLVMINQLVFQLSIPLNFLGSVYREMRQAFTDMEQL 417


>SPBC11C11.03 |ndc80|ndc10, tid3|spindle pole body protein
           Ndc80|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 624

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 475 TLTFNGLNSQSTSLAREGTLI 413
           T  FNGL +  TSLA + TL+
Sbjct: 24  TFGFNGLGTSRTSLAPQRTLV 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,809,613
Number of Sequences: 5004
Number of extensions: 59748
Number of successful extensions: 186
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)