Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n01f
         (642 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)                 90   2e-18
SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.001
SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.34 
SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)                 29   4.2  
SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)         28   7.4  
SB_5747| Best HMM Match : NAF1 (HMM E-Value=7.3)                       27   9.8  
SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.8  

>SB_20291| Best HMM Match : ATP-synt_ab (HMM E-Value=0)
          Length = 475

 Score = 89.8 bits (213), Expect = 2e-18
 Identities = 35/56 (62%), Positives = 45/56 (80%)
 Frame = +3

Query: 474 VGSHITGGDLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGNYKVTDVVLETEFDG 641
           +G HITGGD+YG V ENT +KH +++ PKAKGT+TYIAP GNY + D +LE +FDG
Sbjct: 1   IGDHITGGDIYGYVQENTFIKHHIMLHPKAKGTITYIAPQGNYYIEDTILEIDFDG 56


>SB_21210| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 428

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
 Frame = +3

Query: 111 VFAVSGPVVTAEKMSGSAMYELVRVGY---NELVGEIIRLEGDMATIQVYEETSGVTVGD 281
           V  V+GP+V  + +      E+V +     ++  GE++ + G  A +QV+E TSG+    
Sbjct: 17  VSGVNGPLVILDNVKFPKFAEIVTLTLQDGSQRSGEVLEVSGSKAVVQVFEGTSGIDAKH 76

Query: 282 PVLR-TGKPLSVELGPGILGSIFDG 353
                TG  L   +   +LG +F+G
Sbjct: 77  TTCEFTGDILRTPVSEDMLGRVFNG 101


>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score = 32.3 bits (70), Expect = 0.34
 Identities = 16/52 (30%), Positives = 26/52 (50%)
 Frame = +3

Query: 213 IRLEGDMATIQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPL 368
           + LE D   + V+     +  GD V RTG  + V +G  +LG + D +  P+
Sbjct: 3   LNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPI 54


>SB_44778| Best HMM Match : TPR_2 (HMM E-Value=0.00023)
          Length = 1016

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -2

Query: 242 DGGHVTFKTDNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGEDI 108
           D  H+T    NLTD+  +T  D  + S   HL  SDD    G+D+
Sbjct: 481 DDVHLTSDDGNLTDDVHLTSNDVYLTSDGVHL-TSDDVHLTGDDV 524


>SB_16595| Best HMM Match : Peptidase_A17 (HMM E-Value=9.1e-11)
          Length = 1692

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -3

Query: 352 PSKMEPKIPGPSSTDKGFPVRSTGSPTVTPEVSS 251
           P+   P IP  S    G+P  +TG PT  P  SS
Sbjct: 315 PTTGIPVIPQSSVLTPGYPSANTGYPTAIPGYSS 348


>SB_5747| Best HMM Match : NAF1 (HMM E-Value=7.3)
          Length = 268

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 4/47 (8%)
 Frame = +1

Query: 478 GPTSPVEICMVLYTRTLWSSTGCWSR----PKPREQLPISHRPGTTK 606
           GP  P  IC+   +    SS   W R    P PR++LP+   P  T+
Sbjct: 183 GPDIP--ICVAASSSEFVSSVRIWVRDDRVPTPRKRLPLRQAPAATR 227


>SB_46088| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3306

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 14/35 (40%), Positives = 16/35 (45%)
 Frame = -2

Query: 434 GQGRHVDTLGDVDGLSQLVDVLEGTLNTVKDGTQD 330
           G   H+  LGD     Q +  L G LNTV    QD
Sbjct: 480 GAETHLSNLGDAPSGKQELHALNGVLNTVDKHHQD 514


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,900,321
Number of Sequences: 59808
Number of extensions: 490815
Number of successful extensions: 1235
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1065
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1620947750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)