Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11n01f
         (642 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   0.82 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.4  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   1.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    24   1.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   2.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       23   3.3  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   7.7  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        21   7.7  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 0.82
 Identities = 9/36 (25%), Positives = 19/36 (52%)
 Frame = +3

Query: 345 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 452
           +DG Q  L+ I+E+     +  G+++      V+W+
Sbjct: 172 YDGFQVDLRHIDEIRGKNVVDIGVDLSEFYTSVEWD 207


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 121 YLDPSSLPKRCPDLLCTSWSVSVTMNSSVRLSVLKVTWPPSRYTKKLQV 267
           +LD S++P R       S  V+  +  + + S +  + PP  YTK + +
Sbjct: 264 WLDQSAVPAR------VSLGVTTLLTMATQTSGINASLPPVSYTKAIDI 306


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 121 YLDPSSLPKRCPDLLCTSWSVSVTMNSSVRLSVLKVTWPPSRYTKKLQV 267
           +LD S++P R       S  V+  +  + + S +  + PP  YTK + +
Sbjct: 264 WLDQSAVPAR------VSLGVTTLLTMATQTSGINASLPPVSYTKAIDI 306


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/41 (26%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +3

Query: 333 LGS-IFDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 452
           LGS  +DG +  L+ ++E + S  +  G+++      V+W+
Sbjct: 171 LGSWTYDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWD 211


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +3

Query: 345 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 452
           ++G Q  LK + +   S  + KGI++      V+W+
Sbjct: 181 YNGAQVDLKHMKQEAGSNLVAKGIDLSDFYLSVEWD 216


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 8/36 (22%), Positives = 20/36 (55%)
 Frame = +3

Query: 345 FDGIQRPLKDINELTQSIYIPKGINVPSLAREVDWE 452
           +DG +  L+ ++E + S  +  G+++      V+W+
Sbjct: 176 YDGFKVDLRHMDEKSGSNVVDVGVDLSEFYMSVEWD 211


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 14/45 (31%), Positives = 20/45 (44%)
 Frame = +3

Query: 108 YVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMATI 242
           Y+F   G V  A        YE+ R    +L+ EI+  E D  T+
Sbjct: 407 YLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERENDSGTL 451


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/26 (38%), Positives = 12/26 (46%)
 Frame = +3

Query: 324 PGILGSIFDGIQRPLKDINELTQSIY 401
           PGILG IF  +   L        S+Y
Sbjct: 338 PGILGGIFGALMAALATEASYDYSLY 363


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -3

Query: 163 ADPDIFSAVTTGPDTAKTYPNLSS 92
           A+P    A TT P TA    +LS+
Sbjct: 22  ANPGTIQACTTSPATASLESSLSA 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,816
Number of Sequences: 438
Number of extensions: 4517
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19315974
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)