Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11n01f
(642 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit... 256 1e-68
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 52 3e-07
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 52 3e-07
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 50 1e-06
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 50 1e-06
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 50 1e-06
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 40 0.002
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 40 0.002
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 40 0.002
At2g43870.1 68415.m05454 polygalacturonase, putative / pectinase... 31 0.65
At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR... 30 1.5
At4g21240.1 68417.m03071 F-box family protein contains F-box dom... 29 2.6
At4g13350.2 68417.m02088 human Rev interacting-like protein-rela... 29 3.5
At4g13350.1 68417.m02087 human Rev interacting-like protein-rela... 29 3.5
At1g55390.1 68414.m06335 DC1 domain-containing protein similar t... 29 3.5
At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to ... 28 4.6
At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to ... 28 4.6
At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to cyto... 28 4.6
At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger) fa... 28 4.6
At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger) fa... 28 6.1
At3g01040.1 68416.m00005 glycosyl transferase family 8 protein c... 27 8.0
At2g41820.1 68415.m05168 leucine-rich repeat transmembrane prote... 27 8.0
At1g34480.1 68414.m04285 DC1 domain-containing protein contains ... 27 8.0
>At1g78900.1 68414.m09198 vacuolar ATP synthase catalytic subunit A
/ V-ATPase A subunit / vacuolar proton pump alpha
subunit / V-ATPase 69 kDa subunit identical to SP|O23654
Vacuolar ATP synthase catalytic subunit A (EC 3.6.3.14)
(V-ATPase A subunit) (Vacuolar proton pump alpha
subunit) (V-ATPase 69 kDa subunit) {Arabidopsis
thaliana}
Length = 623
Score = 256 bits (626), Expect = 1e-68
Identities = 120/194 (61%), Positives = 147/194 (75%)
Frame = +3
Query: 60 GGLRTIANE*NEERFGYVFAVSGPVVTAEKMSGSAMYELVRVGYNELVGEIIRLEGDMAT 239
G L T ++ E +GYV VSGPVV A+ M+G+AMYELVRVG++ L+GEIIRLEGD AT
Sbjct: 7 GKLTTFEDDEKESEYGYVRKVSGPVVVADGMAGAAMYELVRVGHDNLIGEIIRLEGDSAT 66
Query: 240 IQVYEETSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGIN 419
IQVYEET+G+TV DPVLRT KPLSVELGPGILG+IFDGIQRPLK I ++ +YIP+G++
Sbjct: 67 IQVYEETAGLTVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIARISGDVYIPRGVS 126
Query: 420 VPSLAREVDWEFNPLNVKVGSHITGGDLYGIVHENTLVKHRMLVPPKAKGTVTYIAPAGN 599
VP+L ++ WEF P G ITGGDLY V ENTL+ H + +PP A G +TYIAPAG
Sbjct: 127 VPALDKDCLWEFQPNKFVEGDTITGGDLYATVFENTLMNHLVALPPDAMGKITYIAPAGQ 186
Query: 600 YKVTDVVLETEFDG 641
Y + D V+E EF G
Sbjct: 187 YSLKDTVIELEFQG 200
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +3
Query: 111 VFAVSGPVVTAEKMSGSAMYELVRVGYNELV---GEIIRLEGDMATIQVYEETSGV-TVG 278
V V+GP+V EK+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 23 VSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKY 82
Query: 279 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 404
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 83 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 124
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 52.0 bits (119), Expect = 3e-07
Identities = 30/102 (29%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +3
Query: 111 VFAVSGPVVTAEKMSGSAMYELVRVGYNELV---GEIIRLEGDMATIQVYEETSGV-TVG 278
V V+GP+V EK+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 23 VSGVAGPLVILEKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGEKAVVQVFEGTSGIDNKY 82
Query: 279 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 404
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 83 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 124
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +3
Query: 111 VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGV-TVG 278
V V+GP+V +K+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 22 VSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKF 81
Query: 279 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 404
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 82 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +3
Query: 111 VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGV-TVG 278
V V+GP+V +K+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 22 VSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKF 81
Query: 279 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 404
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 82 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 50.4 bits (115), Expect = 1e-06
Identities = 29/102 (28%), Positives = 54/102 (52%), Gaps = 4/102 (3%)
Frame = +3
Query: 111 VFAVSGPVVTAEKMSGSAMYELVRVGYNE---LVGEIIRLEGDMATIQVYEETSGV-TVG 278
V V+GP+V +K+ G E+V + + G+++ ++G+ A +QV+E TSG+
Sbjct: 22 VSGVAGPLVILDKVKGPKYQEIVNIRLGDGSTRRGQVLEVDGEKAVVQVFEGTSGIDNKF 81
Query: 279 DPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYI 404
V TG+ L + +LG IF+G +P+ + + Y+
Sbjct: 82 TTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYL 123
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 258 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 431
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 141 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 258 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 431
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 144 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 201
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 39.5 bits (88), Expect = 0.002
Identities = 19/58 (32%), Positives = 31/58 (53%)
Frame = +3
Query: 258 TSGVTVGDPVLRTGKPLSVELGPGILGSIFDGIQRPLKDINELTQSIYIPKGINVPSL 431
T G+ G VL TG P++V +G LG I + + P+ + E+ Y+P + P+L
Sbjct: 141 TEGLVRGRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGEIKTEHYLPIHRDAPAL 198
>At2g43870.1 68415.m05454 polygalacturonase, putative / pectinase,
putative similar to SP|P48979 Polygalacturonase
precursor (EC 3.2.1.15) (PG) (Pectinase) {Prunus
persica}; contains PF00295: Glycosyl hydrolases family
28 (polygalacturonases)
Length = 384
Score = 31.1 bits (67), Expect = 0.65
Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -2
Query: 545 HPVLDQSVLVYNTIQISTGD----VGPDLNI*WVKFPVNLPGQGRHVDTLGDVDGLSQLV 378
H SV ++NT +ISTGD +GP N W++ PG G + +LG S +
Sbjct: 194 HVQSSSSVSIFNT-KISTGDDCVSIGPGTNGLWIENVACGPGHGISIGSLGKDSVESGVQ 252
Query: 377 DVLEGTLNTVKDGTQDTGTK 318
+V T+ TV D G +
Sbjct: 253 NV---TVKTVTFTGTDNGVR 269
>At5g38340.1 68418.m04627 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1059
Score = 29.9 bits (64), Expect = 1.5
Identities = 9/34 (26%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +3
Query: 366 LKDINELTQSIYIPKGIN-VPSLAREVDWEFNPL 464
L+ + + ++ +Y+P+G+N +P R ++W++ P+
Sbjct: 613 LRVLRDRSEKLYLPQGLNYLPKKLRLIEWDYFPM 646
>At4g21240.1 68417.m03071 F-box family protein contains F-box domain
Pfam:PF00646
Length = 417
Score = 29.1 bits (62), Expect = 2.6
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +3
Query: 453 FNPLNVKVGSHITGGDLYGIVHENTLVKHRMLVP-PKAKGTVTY 581
+NP + V + GD Y IV N ++ + +P PK TV Y
Sbjct: 125 YNPSSESVNGLVCFGDFYNIVVWNPSMRQHVTLPEPKPHSTVRY 168
>At4g13350.2 68417.m02088 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 139 VTTGPDTAKTYPNLSSFYSLAIVLKPP 59
+ T DT +TY N S ++ A+ L PP
Sbjct: 566 INTSYDTQQTYQNFGSSFAAAVPLNPP 592
>At4g13350.1 68417.m02087 human Rev interacting-like protein-related
/ hRIP protein-related similar to SP|P52594
Nucleoporin-like protein RIP (HIV-1 Rev-binding protein)
(Rev interacting protein) (Rev/Rex activation
domain-binding protein) {Homo sapiens}; contains Pfam
profile PF01412: Putative GTPase activating protein for
Arf
Length = 602
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -3
Query: 139 VTTGPDTAKTYPNLSSFYSLAIVLKPP 59
+ T DT +TY N S ++ A+ L PP
Sbjct: 566 INTSYDTQQTYQNFGSSFAAAVPLNPP 592
>At1g55390.1 68414.m06335 DC1 domain-containing protein similar to
hypothetical protein GI:4204272 from [Arabidopsis
thaliana] contains weak PHD zinc finger motifs contains
weak PHD zinc finger motifs DC1 domain, a divergent
protein kinase C domain of unknown function.
Length = 684
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -2
Query: 242 DGGHVTFKTDNLTDEFIVTDTDQLVHSRSGHLFGSDDGSRYGED 111
DGGH + + D+ IV D D + R G G DG +D
Sbjct: 124 DGGHDDEDNNFVDDDVIVNDGDGVGEDRDGDSDGDGDGGDDDDD 167
>At5g62760.2 68418.m07879 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 383
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 352 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSYTWM 239
P + P P PSS FPV + SPT+ P SSY M
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSYPQM 241
>At5g62760.1 68418.m07878 nuclear protein ZAP-related similar to
nuclear protein ZAP, Mus musculus, EMBL:AB033168 this
cDNA provides a truncated ORF likely due to a skipped
exon. An alternative ORF is provided.
Length = 661
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/39 (43%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = -3
Query: 352 PSKMEPKIPGPSSTDKG-FPVRSTGSPTVTPEVSSYTWM 239
P + P P PSS FPV + SPT+ P SSY M
Sbjct: 204 PLPVSPPPPLPSSHPSSLFPVTTNSSPTIPPS-SSYPQM 241
>At5g57260.1 68418.m07152 cytochrome P450 71B10 identical to
cytochrome P450 71B10 (SP:Q9LVD2) [Arabidopsis thaliana]
Length = 1483
Score = 28.3 bits (60), Expect = 4.6
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = -2
Query: 638 VELRLQHHVCDFVVPGRCDIGNCSLGFGRDQHPVLDQSVLVYNTIQIST 492
V + VC V+ G C IG L G + V D VLV N + +T
Sbjct: 677 VNYPFDNFVCSAVISGFCKIGKPELALGFFESAV-DSGVLVPNLVTYTT 724
>At1g17970.1 68414.m02223 zinc finger (C3HC4-type RING finger)
family protein similar to Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 368
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +3
Query: 390 QSIYIPKGINVPSLAREVDWEFNPLNVKVGSHI 488
+S+ P+G N+PS R++D + N N +GS +
Sbjct: 163 RSVDPPRGRNIPSSRRKIDVDNNNYNHTLGSSV 195
>At4g12150.1 68417.m01930 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 357
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = -2
Query: 614 VCDFVVPGRCDIGNCSLGFGRDQHPVLDQSVLVYNTIQISTGD 486
+CDF+ P + +LGFGR+ + + + Y T+ +++ D
Sbjct: 265 LCDFLSP-KISTEFINLGFGRNGFTLTMDAKVTYRTVSVTSND 306
>At3g01040.1 68416.m00005 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 533
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = +3
Query: 318 LGPGILGSIFDGIQRPLKDINELTQSI---YIPKGINVP 425
LGP +LG I D QR ++D ++ + IP G+ +P
Sbjct: 77 LGPRLLGRIDDSEQRLVRDFYKILNEVSTQEIPDGLKLP 115
>At2g41820.1 68415.m05168 leucine-rich repeat transmembrane protein
kinase, putative
Length = 890
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +3
Query: 177 VRVGYNELVGEIIRLEGDMATIQVYEETSGVTVGDPVLRTGK 302
+R+G NELVG I R G+++ + +E G+ V K
Sbjct: 259 IRIGNNELVGVIPRTIGNISGLTYFEADKNNLSGEIVAEFSK 300
>At1g34480.1 68414.m04285 DC1 domain-containing protein contains
Pfam protein PF03107 DC1 domain
Length = 602
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -2
Query: 617 HVCDFVVPGRCDIGNCSLGFGRDQH 543
H CDFVV C C + R QH
Sbjct: 210 HQCDFVVHKECIYSPCIIKISRHQH 234
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,222,222
Number of Sequences: 28952
Number of extensions: 335971
Number of successful extensions: 1027
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1016
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -