Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m24r
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B f...    33   0.14 
At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.33 
At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B f...    32   0.33 
At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)...    31   1.0  
At4g17740.2 68417.m02649 C-terminal processing protease, putativ...    30   1.3  
At2g13560.1 68415.m01495 malate oxidoreductase, putative similar...    29   3.1  
At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domai...    29   4.0  
At3g49200.1 68416.m05377 hypothetical protein                          28   7.1  
At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) / chlorop...    28   7.1  
At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) / chlorop...    28   7.1  
At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) / chlorop...    28   7.1  
At2g45000.1 68415.m05603 expressed protein contains Pfam profile...    27   9.3  
At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PG...    27   9.3  
At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /...    27   9.3  

>At1g48520.2 68414.m05423 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 475

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 17/71 (23%), Positives = 33/71 (46%)
 Frame = -1

Query: 670 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 491
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 490 NLEGKVARITG 458
            + GK+ +  G
Sbjct: 454 TISGKIGKEVG 464


>At1g48520.3 68414.m05424 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 488

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = -1

Query: 670 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 491
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 490 NLEGKVAR 467
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At1g48520.1 68414.m05425 glutamyl-tRNA(Gln) amidotransferase B
           family protein contains Pfam profiles: PF02934 PET112
           family, N terminal region, PF02637 GatB/Yqey domain,
           PF01162 PET112 family, C terminal region
          Length = 550

 Score = 32.3 bits (70), Expect = 0.33
 Identities = 16/68 (23%), Positives = 32/68 (47%)
 Frame = -1

Query: 670 NVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVAGVTGR 491
           +V V ++    +   +   +A   + S IA +LKN KL +N + +    L   +A +   
Sbjct: 394 DVSVAEYFDAVIGKGAEVKLAANWIMSDIAAYLKNEKLSINDIKLTPQELAELIAAIKDG 453

Query: 490 NLEGKVAR 467
            + GK+ +
Sbjct: 454 TISGKIGK 461


>At4g25540.1 68417.m03682 DNA mismatch repair protein MSH3 (MSH3)
           identical to SP|O65607 DNA mismatch repair protein MSH3
           (AtMsh3) {Arabidopsis thaliana}
          Length = 1081

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 4/84 (4%)
 Frame = -1

Query: 430 NNVLRLGTNDAQYVEVIHTDGSGVNKNGLGVAIGHIDFFVNGRLVQPGCTNNLCSHN--- 260
           N  + L  N  Q +EV+  +  G     L   + H       RL++   T+ LC  N   
Sbjct: 417 NTEMTLSANTLQQLEVVKNNSDGSESGSLFHNMNHTLTVYGSRLLRHWVTHPLCDRNLIS 476

Query: 259 -RAYEVFAATITHGKHYGNQCSTE 191
            R   V   +   G H  +Q S+E
Sbjct: 477 ARLDAVSEISACMGSHSSSQLSSE 500


>At4g17740.2 68417.m02649 C-terminal processing protease, putative
           similar to C-terminal protease precursor [Spinacia
           oleracea] GI:999435; similar to SP|Q44879| (Bartonella
           bacilliformis)
          Length = 505

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 27/108 (25%), Positives = 49/108 (45%)
 Frame = +3

Query: 309 LTKKSMCPIATPKPFLLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSK 488
           L   S+ PI+  KP  + P+ S+ I+     S+  SRS +   SR+  + P ++    ++
Sbjct: 4   LASSSLSPISFTKPNKINPNFSIQISKASKFSYARSRSNI---SRSNAANPGVVFVC-NR 59

Query: 489 FLPVTPAT*APRLKPTMCTLLSGNLRFFKKVAILDPTPVTAITAVEYV 632
           FL V       +L   +    S N R    VA++    V  ++++  V
Sbjct: 60  FLCVIERNDQRKLSGKVMMKSSVNFRQNLSVALVRIVSVLLVSSISVV 107


>At2g13560.1 68415.m01495 malate oxidoreductase, putative similar to
           NAD-dependent malic enzyme 62 kDa isoform, mitochondrial
           precursor (EC 1.1.1.39) (NAD-ME) (SP:P37221) {Solanum
           tuberosum}
          Length = 623

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/79 (26%), Positives = 38/79 (48%), Gaps = 7/79 (8%)
 Frame = -1

Query: 505 GVTGRNLEGKVARITGLDPSARDWENNVLRLGTNDAQYVE-VIHTDGSGV------NKNG 347
           G+  +N  G   R  G+  SA D    +  +    A+ V+ ++ TDGS +        +G
Sbjct: 148 GLVCQNYSGLFRRPRGMYFSAEDRGEMMSMVYNWPAEQVDMIVVTDGSRILGLGDLGVHG 207

Query: 346 LGVAIGHIDFFVNGRLVQP 290
           +G+A+G +D +V    + P
Sbjct: 208 IGIAVGKLDLYVAAAGINP 226


>At5g24810.1 68418.m02930 ABC1 family protein contains Pfam domain,
           PF03109: ABC1 family
          Length = 1009

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 712 NPIVKDAFLTSGDYNVIVVDWSSFSL 635
           NP + DAF+ +GDY+ +VV    F L
Sbjct: 901 NPRIHDAFMGAGDYSGLVVPDGKFGL 926


>At3g49200.1 68416.m05377 hypothetical protein
          Length = 507

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 21/56 (37%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
 Frame = -1

Query: 487 LEGKVARITG--LDPSARDWENNVLRLGTNDAQYVEVI---HTDGSGVNKNGLGVA 335
           LE  V+ +T   LD S   WE ++L L T+DA+ V V+   H+ G G++   L +A
Sbjct: 120 LESYVSDLTTIPLDTSKPLWEVHLLDLKTSDAENVAVLRIHHSLGDGMSMMSLVLA 175


>At1g44446.3 68414.m05115 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 433

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 295 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 185
           +PGC  N C+H RA  +   T+  G+    ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293


>At1g44446.2 68414.m05114 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 511

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 295 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 185
           +PGC  N C+H RA  +   T+  G+    ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293


>At1g44446.1 68414.m05113 chlorophyll a oxygenase (CAO) /
           chlorophyll b synthase identical to chlorophyll a
           oxygenase GI:5853117 from [Arabidopsis thaliana];
           contains Pfam PF00355 Rieske [2Fe-2S] domain
          Length = 536

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
 Frame = -1

Query: 295 QPGCTNNLCSHNRAYEVFAATITHGK----HYGNQCSTEAE 185
           +PGC  N C+H RA  +   T+  G+    ++G + ST+ E
Sbjct: 254 KPGCVRNTCAH-RACPLDLGTVNEGRIQCPYHGWEYSTDGE 293


>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
           PF05064 Nsp1-like C-terminal region
          Length = 739

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +3

Query: 354 LLTPDPSV*ITSTY*ASFVPSRSTLFSQSRAEGSRPVILATLPSKFLPVTPAT 512
           L +  P+   T+++    VP  ST  S S+ + + P    +LPS      PAT
Sbjct: 451 LASSTPATGSTNSFTGFAVPKTSTPASSSQPQTTSPAFSFSLPSSTSTTAPAT 503


>At2g36910.1 68415.m04527 multidrug resistance P-glycoprotein (PGP1)
            identical to P-glycoprotein GI:3849833 from [Arabidopsis
            thaliana]; homologous to mammalian mdr gene,contains
            ATP-binding cassette; related to multi drug resistance
            proteins
          Length = 1286

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 247  VFAATITHGKHYGNQCSTEAEI 182
            +F  TI     YG++C+TEAEI
Sbjct: 1111 LFGTTIYENIAYGHECATEAEI 1132


>At2g01570.1 68415.m00081 gibberellin response modulator (RGA1) /
           gibberellin-responsive modulator identical to GB:Y11336,
           member of SCARECROW family
          Length = 587

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 469 RITGLDPSARDWENNVLRLGTNDAQYVEVIHTD 371
           R+TG+ P A D  +++  +G   AQ  E IH +
Sbjct: 354 RLTGIGPPAPDNSDHLHEVGCKLAQLAEAIHVE 386


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,359,143
Number of Sequences: 28952
Number of extensions: 323851
Number of successful extensions: 845
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 845
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)