Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m24f
(625 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0023 - 19325966-19326046,19326132-19326248,19326635-193267... 33 0.24
03_02_0523 + 9112577-9112608,9112626-9113251,9113696-9113747,911... 31 0.98
05_03_0376 - 13252220-13252354,13252433-13252541,13253279-132533... 30 1.7
05_01_0493 + 4113869-4116728,4116859-4117370 30 1.7
06_02_0072 + 11152988-11153102,11153581-11153705,11153860-111540... 29 2.3
03_06_0035 - 31201115-31203646 29 3.0
01_06_0036 + 25786530-25786756,25788000-25788076,25788538-257886... 28 6.9
08_02_1170 + 24876197-24877070,24877563-24877606,24877805-248779... 27 9.2
06_03_1043 - 27097094-27097735 27 9.2
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 27 9.2
02_05_0435 - 28958422-28958665,28959328-28959462,28960056-289602... 27 9.2
>11_06_0023 -
19325966-19326046,19326132-19326248,19326635-19326703,
19326922-19327119,19327388-19327591,19327688-19327828,
19328416-19328625,19329330-19329944
Length = 544
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/79 (22%), Positives = 37/79 (46%)
Frame = +3
Query: 282 VKDAFLTSGDYNVIVVDWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLNKVHIVGFN 461
++D + D NV + +L + A +A + IA +LKN KL ++++ +
Sbjct: 379 MQDVLFLANDDNV--ARFFDSTLEHGADAKLAANWIMGDIAAYLKNEKLSIDEIKLTPLE 436
Query: 462 LGAHVAGVTGRNLEGKVAR 518
L +A + + GK+ +
Sbjct: 437 LSELIASIRNGTISGKIGK 455
>03_02_0523 +
9112577-9112608,9112626-9113251,9113696-9113747,
9114713-9114782
Length = 259
Score = 30.7 bits (66), Expect = 0.98
Identities = 27/133 (20%), Positives = 57/133 (42%), Gaps = 1/133 (0%)
Frame = +3
Query: 81 DAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTA 260
D+I +E L + S++ N+I+ D F + ++ D+ + + H G
Sbjct: 100 DSINGIESHKMLKVQAFSSSSSSNNIS--SDAFTSSRSNGTKDTDSWDMQHLEYDHPGLM 157
Query: 261 TTTINPIVKDAFLTSGDYNVIVV-DWSSFSLSTYSTAVMAVTGVGSSIATFLKNLKLPLN 437
+ +++A+ G Y+V++ D +S + + V+ + I L L N
Sbjct: 158 LLPYDDDIEEAYDVLGQYDVVMKNDLASGDVDGSAAGVIDEKLYSNGIEDLL-ILPRGQN 216
Query: 438 KVHIVGFNLGAHV 476
+H+V N+ H+
Sbjct: 217 SIHVVYANIVCHL 229
>05_03_0376 -
13252220-13252354,13252433-13252541,13253279-13253337,
13253608-13253700,13254078-13254153,13254405-13254467,
13254535-13254629,13254743-13254845,13254930-13255024,
13255098-13255156,13255445-13255656,13256090-13256222,
13256691-13257081
Length = 540
Score = 29.9 bits (64), Expect = 1.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 54 AIAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFP 182
A F + + ++++ R L+K + SNA+ I +TED FP
Sbjct: 216 AQGFDSQSSSSVKSSTRDEKLHKSFQISNAENEQILVTEDDFP 258
>05_01_0493 + 4113869-4116728,4116859-4117370
Length = 1123
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/42 (42%), Positives = 20/42 (47%)
Frame = +3
Query: 33 LKLITLLAIAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSI 158
LK +T LAI A +G L R G L Y Y NA SI
Sbjct: 244 LKNLTTLAIYTALLSGPIPPELGRCGCLENIYLYENALSGSI 285
>06_02_0072 +
11152988-11153102,11153581-11153705,11153860-11154004,
11154219-11154284,11154418-11154540,11154839-11154961,
11156065-11156193,11156510-11156632,11156737-11156838,
11156943-11157065,11157169-11157270,11157370-11157492,
11157791-11157913,11158209-11158331,11158633-11158761,
11160210-11161039
Length = 867
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 120 YLNFQIAPSFEWHLRCKRQMRWPT 49
Y++F + P W++ CK +M W T
Sbjct: 61 YIDFIVCPLAVWNIVCKERMNWAT 84
>03_06_0035 - 31201115-31203646
Length = 843
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/53 (32%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 156 ITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTINPIVKDAFL-TSGD 311
+ + +DH+ N T A F+ ++D +V++H S AT NP++++ + T GD
Sbjct: 125 LPIPDDHY---NLTTATFSVSTDDMVLLHDFSFIATPP-NPVLREYIVATQGD 173
>01_06_0036 +
25786530-25786756,25788000-25788076,25788538-25788625,
25788706-25788786,25788866-25788940,25789048-25789149,
25789589-25789726,25791559-25791585,25791696-25791786,
25792423-25792584
Length = 355
Score = 27.9 bits (59), Expect = 6.9
Identities = 36/155 (23%), Positives = 61/155 (39%), Gaps = 3/155 (1%)
Frame = +3
Query: 24 RKMLKLITLLAIAFAACNGDAIQNLERFGSLNKYYYYSNAQRNSITLTEDHFPTGN-DTA 200
R M +L+ L A G +Q L F ++ YY++S+ R SI E P D
Sbjct: 80 RWMSQLLALTIYAILLMPG-FLQVLSWF-TVGYYYFFSSQVRRSIVYGEQ--PRNRLDLY 135
Query: 201 AP--FNNNSDIVVIIHGHSGTATTTINPIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVM 374
P N +V + G + + L V +D+ +F T V
Sbjct: 136 IPKDINRPCPVVAFVTGGAWIIGYKAWGSLLGRRLAERGIIVACIDYRNFPQGTIGDMVS 195
Query: 375 AVTGVGSSIATFLKNLKLPLNKVHIVGFNLGAHVA 479
+ S + + + N++++VG + GAH+A
Sbjct: 196 DASQGISYVCNNIASYGGDPNRIYLVGQSAGAHIA 230
>08_02_1170 +
24876197-24877070,24877563-24877606,24877805-24877900,
24877999-24878544
Length = 519
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -1
Query: 439 LLSGNLRFFKKVAILDPTPVTAITAVEYVDKLNDDQSTTITL 314
+LS LRF K L PV + + + +DD +TT+ L
Sbjct: 393 ILSNGLRFLKGAPTLVIVPVACVFSGIMTEFTSDDSTTTLVL 434
>06_03_1043 - 27097094-27097735
Length = 213
Score = 27.5 bits (58), Expect = 9.2
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 6/84 (7%)
Frame = -1
Query: 586 ASFVPSRST---LFSQSRAEGSRPVILATLPSKFLPVTPAT*APRLKPTMCTLLSGNLRF 416
A+F P+ ++ L S A G + ++LA ++ L P + PRL PT+ L +G
Sbjct: 95 AAFSPAAASAGLLAFLSDASGHKTLLLANPITRLLAALPISPTPRLSPTV-GLAAGPTSI 153
Query: 415 FKKVA---ILDPTPVTAITAVEYV 353
VA ++ P V I+A +V
Sbjct: 154 IAVVAGDDLVSPFAVKNISADTFV 177
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 27.5 bits (58), Expect = 9.2
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = -3
Query: 221 RIIVKGRSSIVSSGKVVFGECNRISLCIAIVIIFI*TSKSLQVLNGISVASGKCDGQQSN 42
RIIV+ SS+V KVV G S I +I S S ++ + SG+CD Q +
Sbjct: 2038 RIIVELPSSMVRPLKVVRGTFQVTSKRINFIID---ESASESNMDDHASTSGQCDQQDKD 2094
Query: 41 QFQHFSRLHEM 9
+ S LH++
Sbjct: 2095 RSWLISSLHQI 2105
>02_05_0435 -
28958422-28958665,28959328-28959462,28960056-28960211,
28960287-28961092,28961177-28961254,28961809-28961883,
28962127-28962215,28962735-28962843,28963007-28963086,
28963739-28963794,28963876-28963958,28964049-28964118,
28964200-28964309,28964395-28964548,28965183-28965382,
28966175-28966348,28969080-28969277,28970564-28970791
Length = 1014
Score = 27.5 bits (58), Expect = 9.2
Identities = 20/93 (21%), Positives = 39/93 (41%)
Frame = +3
Query: 96 LERFGSLNKYYYYSNAQRNSITLTEDHFPTGNDTAAPFNNNSDIVVIIHGHSGTATTTIN 275
++ FG N + YS++ LT P ND N NSD+++ ++ +
Sbjct: 210 VQTFGKCNPEFKYSDSLNPKRFLTNPSVPAHNDGLD--NANSDLILYVNLELVNKKSDRR 267
Query: 276 PIVKDAFLTSGDYNVIVVDWSSFSLSTYSTAVM 374
++K+ L G + + W + S + V+
Sbjct: 268 YVIKE-MLGQGTFGQVAKCWDGETNSYVAVKVI 299
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,370,411
Number of Sequences: 37544
Number of extensions: 325932
Number of successful extensions: 927
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -