Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m23r
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    28   0.73 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   2.2  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    26   3.9  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   6.8  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    25   6.8  

>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 28.3 bits (60), Expect = 0.73
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 231 NNDGLRNDSSISSWLVHVHNDLNERSG 311
           N+  + +  S+  W+   HND+NER G
Sbjct: 138 NSPRVDSRESLCEWICEAHNDVNERLG 164


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 16/41 (39%), Positives = 18/41 (43%)
 Frame = -1

Query: 387 SSRRWCCH*ANRALPRYRWTSRTRPAHSSRSDHCEREPARS 265
           SS R   H      PR  + SR+   HSS   H  R P RS
Sbjct: 108 SSHRTPRHHRRSYSPRSDYGSRSPSPHSSVDSHQSRSPVRS 148


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +3

Query: 219 IGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSND 338
           I +V ND     S ++ W+  +  ++ +   L +CD++ +
Sbjct: 164 IRVVGNDAAEKLSILAGWISRIDRNVPDYGELTYCDFNTN 203


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -1

Query: 429 PHQAHFRTRNHRFPSSRRWCCH*ANRALPRYRWTSRTRPAHSSRSDHCEREPARS 265
           PH+A  R+  +   S RR          PRYR  SR+    S   D+  R P R+
Sbjct: 120 PHEARSRSPYNDERSDRR-------SMSPRYRSRSRSPDGRSRSPDYDRRSPKRN 167


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.0 bits (52), Expect = 6.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 156 FRDNGAFFSLFGDNNGVGFDFIGLVNNDGLRNDSSISSWLVHVH 287
           F+DN +FF L G+      D I  ++ND +    S+ +W + +H
Sbjct: 296 FKDNPSFFMLSGNTIISLHDMITQLSNDSIGAAVSL-TWGIALH 338


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,630,451
Number of Sequences: 5004
Number of extensions: 28692
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)