Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m23f
         (559 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family pr...    29   2.8  
At2g27060.1 68415.m03251 leucine-rich repeat transmembrane prote...    27   6.4  
At1g65440.1 68414.m07424 glycine-rich protein                          27   6.4  
At4g29440.1 68417.m04203 expressed protein  contains Pfam profil...    27   8.5  
At3g07550.2 68416.m00902 F-box family protein (FBL12) contains s...    27   8.5  
At3g07550.1 68416.m00901 F-box family protein (FBL12) contains s...    27   8.5  

>At1g05805.1 68414.m00607 basic helix-loop-helix (bHLH) family
           protein
          Length = 362

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 24/85 (28%), Positives = 37/85 (43%)
 Frame = -1

Query: 325 NNGVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERSGLAWCDWSNDNGGGHDWLSDST 146
           +N +G  F G  ++  LR+DS+       V+N  + +  L     +N+N    D   D +
Sbjct: 60  DNFIGNFFTGAADSSSLRSDSTTCG----VNNSSDGQKQLGN---NNNNNSNKDIFLDRS 112

Query: 145 TVGKREIDDFGCENGLGGVGDSHSY 71
             G  EI      N +GG   S SY
Sbjct: 113 YGGFNEISQQHKSNDIGGGNSSGSY 137


>At2g27060.1 68415.m03251 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1007

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 190 SNDNGGGHDWLSDSTTVGKREIDDFG-CENGLGGV 89
           SN+N  G   L D++TVG   + + G   N LGGV
Sbjct: 425 SNNNFSGSLPLQDASTVGNLSLTNIGLSHNSLGGV 459


>At1g65440.1 68414.m07424 glycine-rich protein 
          Length = 1647

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = -1

Query: 193  WSNDNGGGHD--WLSDSTTVGKREIDDFGCENGLGGVGDSHSYDS 65
            W + +GGG    W +DS   GK+  +D G  +G GG G     +S
Sbjct: 1563 WGSGSGGGGSGGWGNDSG--GKKSSEDGGFGSGSGGGGSDWGNES 1605


>At4g29440.1 68417.m04203 expressed protein  contains Pfam profile:
           PF03398 eukaryotic protein of unknown function, DUF292
          Length = 1090

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -1

Query: 319 GVGFDFIGLVNNDGLRNDSSISSWLVHVHNDLNERS 212
           G+GF  +G  +       + ISSW +  H DL + S
Sbjct: 532 GLGFSLLGSSSKTSDHMPTEISSWSLEGHKDLGKLS 567


>At3g07550.2 68416.m00902 F-box family protein (FBL12) contains
           similarity to F-box protein FBL6 GI:6456737 from [Homo
           sapiens]
          Length = 395

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +3

Query: 483 NLFKCNVNNIGITSIVRIKLTQKYI 557
           +L++CN+++IG+ ++ R  L+ K +
Sbjct: 149 SLYRCNISDIGLETLARASLSLKCV 173


>At3g07550.1 68416.m00901 F-box family protein (FBL12) contains
           similarity to F-box protein FBL6 GI:6456737 from [Homo
           sapiens]
          Length = 395

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 8/25 (32%), Positives = 19/25 (76%)
 Frame = +3

Query: 483 NLFKCNVNNIGITSIVRIKLTQKYI 557
           +L++CN+++IG+ ++ R  L+ K +
Sbjct: 149 SLYRCNISDIGLETLARASLSLKCV 173


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,657,361
Number of Sequences: 28952
Number of extensions: 179196
Number of successful extensions: 536
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 535
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1062855648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)