Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m22r
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   267   7e-72
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)             155   3e-38
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)                 112   2e-25
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 84   9e-17
SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.032
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)                 33   0.17 
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.51 
SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.8  
SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)                  28   6.3  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)                     28   8.4  
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  267 bits (654), Expect = 7e-72
 Identities = 125/153 (81%), Positives = 132/153 (86%)
 Frame = -1

Query: 700  LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 521
            +RGVRFNI+DVTLH DAIHRGGGQIIPT RR LYAC+LTA+P L+EPVY  EIQCPE AV
Sbjct: 672  VRGVRFNIHDVTLHADAIHRGGGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESAV 731

Query: 520  GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 341
            GGIYGVLNRRRG V EES VAGTPMFIVKAYLPV ESFGFTADLRS TGGQAFPQCVFDH
Sbjct: 732  GGIYGVLNRRRGQVLEESNVAGTPMFIVKAYLPVMESFGFTADLRSKTGGQAFPQCVFDH 791

Query: 340  WQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 242
            WQVLPGD  +  S P  VV  TRKRKGLKEG+P
Sbjct: 792  WQVLPGDVHDLASMPGQVVANTRKRKGLKEGIP 824


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score =  155 bits (376), Expect = 3e-38
 Identities = 67/130 (51%), Positives = 90/130 (69%)
 Frame = -1

Query: 700  LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 521
            +R V+F I D  +  + IHRGGGQIIPT RR  Y+  L A PRLMEP +  E+Q P   V
Sbjct: 652  IRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVEVQAPADCV 711

Query: 520  GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 341
              +Y VL RRRGHV +++ V G+P++ +KA++P  +SFGF  DLR++T GQAF   VF H
Sbjct: 712  SSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFETDLRTHTQGQAFCLSVFHH 771

Query: 340  WQVLPGDPCE 311
            WQ++PGDP +
Sbjct: 772  WQIVPGDPLD 781


>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
          Length = 119

 Score =  112 bits (270), Expect = 2e-25
 Identities = 47/91 (51%), Positives = 65/91 (71%)
 Frame = -1

Query: 583 AQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 404
           A PRLMEP +  E+Q P   V  +Y VL RRRGHV +++ V G+P++ +KA++P  +SFG
Sbjct: 1   ATPRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFG 60

Query: 403 FTADLRSNTGGQAFPQCVFDHWQVLPGDPCE 311
           F  DLR++T GQAF   VF HWQ++PGDP +
Sbjct: 61  FETDLRTHTQGQAFCLSVFHHWQIVPGDPLD 91


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 40/89 (44%), Positives = 53/89 (59%), Gaps = 1/89 (1%)
 Frame = -1

Query: 580 QP-RLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFG 404
           QP RLM  +Y C IQ     +G +Y V+ RR G V  E    G+ +F V+A LPV ESFG
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466

Query: 403 FTADLRSNTGGQAFPQCVFDHWQVLPGDP 317
           F+ ++R  T G A PQ +F HW+ +  DP
Sbjct: 467 FSEEIRKRTSGLANPQLMFSHWEAIDLDP 495


>SB_36048| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 312

 Score = 35.9 bits (79), Expect = 0.032
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = -2

Query: 423 LSMSRSVLLPICVPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVS 244
           +S +   L P+ VPTPA R      S + RS  +TRAN+R SP       +RG    K S
Sbjct: 157 ISSTPQTLSPVSVPTPATR------SVLKRSPGKTRANIRGSPRYHDHSHQRGSPKTKTS 210


>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
          Length = 238

 Score = 33.5 bits (73), Expect = 0.17
 Identities = 18/51 (35%), Positives = 27/51 (52%)
 Frame = -1

Query: 520 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 368
           G +   +NRR G V       G   F + A +P+N+ FG+  +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 685 FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 551
           FN   V L    + R   +I+PT RR  +  LLT+     +PVY+
Sbjct: 526 FNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570


>SB_59557| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -2

Query: 387 VPTPADRPSRSAYSTIGRSSLETRANLRASPTTLYRKRERGKD*RKVSQ 241
           +PT  ++ SRS+    G S   TR   R +     R R+RGK+   +S+
Sbjct: 440 LPTEKEKTSRSSSELSGDSQGSTRPRCRPAEPEGTRDRKRGKESESLSK 488


>SB_44930| Best HMM Match : PCMT (HMM E-Value=3.1e-09)
          Length = 283

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
 Frame = +3

Query: 339 QWSNTHCGKACPPVLE--RKSAVKPNDSL 419
           Q+   +CG ACPP  E   KS VK N  L
Sbjct: 159 QYDRVYCGAACPPDFEDYMKSLVKVNGIL 187


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -2

Query: 477  SKSPRWQVHLCSL*RPTYLSMSRSVLLPICVPTPADRPSRSAYSTIGRSSL 325
            +K P +   L SL  P  +  S S  L    P+P  +PS    S I +S++
Sbjct: 3074 NKPPEYSTVLASLSTPKEVHQSASEPLKRVSPSPGGKPSDKVSSVISQSTI 3124


>SB_59638| Best HMM Match : HNF-1_N (HMM E-Value=0)
          Length = 808

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 334 VLPGDPCEPQS-KPYNVVQETRK 269
           +LP  PCEP S KPY    E R+
Sbjct: 65  ILPASPCEPDSPKPYTPESEGRE 87


>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = +3

Query: 582 AVSRHAYKHLLVVGMIWPPPLWMA 653
           A+ +H   HL  +  +WP   WMA
Sbjct: 13  ALRKHQCSHLFTIKRVWPVTRWMA 36


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,546,987
Number of Sequences: 59808
Number of extensions: 517666
Number of successful extensions: 1250
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1247
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)