Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m22r
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 286 9e-78
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 286 9e-78
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 152 2e-37
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 152 2e-37
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 71 1e-12
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 37 0.012
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 30 1.4
AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical ... 30 1.8
AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical ... 29 4.2
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr... 28 5.6
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical protein
F25H5.4 protein.
Length = 852
Score = 286 bits (702), Expect = 9e-78
Identities = 128/153 (83%), Positives = 139/153 (90%)
Frame = -1
Query: 700 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 521
+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AV
Sbjct: 691 MRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAV 750
Query: 520 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 341
GGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH
Sbjct: 751 GGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 810
Query: 340 WQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 242
WQVLPGDP E +KP +V +TRKRKGLKEG+P
Sbjct: 811 WQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 286 bits (702), Expect = 9e-78
Identities = 128/153 (83%), Positives = 139/153 (90%)
Frame = -1
Query: 700 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 521
+RGVRFN++DVTLH DAIHRGGGQIIPT RR YA +LTA+PRL+EPVYL EIQCPE AV
Sbjct: 691 MRGVRFNVHDVTLHADAIHRGGGQIIPTARRVFYASVLTAEPRLLEPVYLVEIQCPEAAV 750
Query: 520 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 341
GGIYGVLNRRRGHVFEESQV GTPMF+VKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH
Sbjct: 751 GGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 810
Query: 340 WQVLPGDPCEPQSKPYNVVQETRKRKGLKEGLP 242
WQVLPGDP E +KP +V +TRKRKGLKEG+P
Sbjct: 811 WQVLPGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 152 bits (369), Expect = 2e-37
Identities = 73/162 (45%), Positives = 101/162 (62%), Gaps = 12/162 (7%)
Frame = -1
Query: 700 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 521
+R V+F + D + T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V
Sbjct: 788 IRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCV 847
Query: 520 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 341
+Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQAF F H
Sbjct: 848 AAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHH 907
Query: 340 WQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 251
WQ++PGDP + Q P+ + +TR+RKGL E
Sbjct: 908 WQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 949
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 152 bits (369), Expect = 2e-37
Identities = 73/162 (45%), Positives = 101/162 (62%), Gaps = 12/162 (7%)
Frame = -1
Query: 700 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 521
+R V+F + D + T+ ++RGGGQ+IPT RRC Y+ L A PRLMEP Y E+ P V
Sbjct: 663 IRQVKFKLLDAAIATEPLYRGGGQMIPTARRCAYSAFLMATPRLMEPYYTVEVVAPADCV 722
Query: 520 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDH 341
+Y VL +RRGHV ++ + G+PM+ + AY+PV +SFGF DLR +T GQAF F H
Sbjct: 723 AAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFETDLRIHTQGQAFCMSAFHH 782
Query: 340 WQVLPGDPCEP---------QSKPY---NVVQETRKRKGLKE 251
WQ++PGDP + Q P+ + +TR+RKGL E
Sbjct: 783 WQLVPGDPLDKSIVIKTLDVQPTPHLAREFMIKTRRRKGLSE 824
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 70.5 bits (165), Expect = 1e-12
Identities = 37/107 (34%), Positives = 53/107 (49%)
Frame = -1
Query: 637 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVA 458
GGQ++ + A RL+ +Y C + A+G ++ VL++R+ V E
Sbjct: 732 GGQMMTAIKASCSAAAKKLALRLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINE 791
Query: 457 GTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 317
T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 792 ATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 838
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/55 (43%), Positives = 28/55 (50%)
Frame = -1
Query: 481 VFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 317
V E T +F V + +PV ESF F LR T G A Q F HWQV+ DP
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDEDP 649
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 37.1 bits (82), Expect = 0.012
Identities = 28/111 (25%), Positives = 48/111 (43%)
Frame = -1
Query: 700 LRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAV 521
+ G+ I D + H A+ +I T + + A L+EP+ E P
Sbjct: 601 IAGIHVRIQDGSTH--AVDSTEIAMINTMQNMMRESFEKANWLLLEPIMKVEATVPTEFQ 658
Query: 520 GGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQ 368
G + L +R + G I +A P+++ FG+T++LRS T G+
Sbjct: 659 GNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSELRSLTEGK 707
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 30.3 bits (65), Expect = 1.4
Identities = 25/95 (26%), Positives = 42/95 (44%), Gaps = 6/95 (6%)
Frame = -1
Query: 637 GGQIIPT-----TRRCLYACLLTAQPRLMEPVYLCEIQCP-EVAVGGIYGVLNRRRGHVF 476
GG+I P ++C+ L + + L EPV +I+ + I L RRR H
Sbjct: 565 GGKINPALLSACAQKCVSEALSSGEMVLTEPVMEVQIEIRNDDPTQPILNELLRRRAHFE 624
Query: 475 EESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGG 371
T + + A LP++E+ + +R+ T G
Sbjct: 625 HSDATESTEIRRICAILPLSETENLSKTVRTLTSG 659
>AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical
protein T24A6.11 protein.
Length = 359
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 93 LLSHLRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 212
+L+ LR+C+ C + TC K FP ++V L+ ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328
>AF016661-4|AAB66050.2| 567|Caenorhabditis elegans Hypothetical
protein F02E11.1 protein.
Length = 567
Score = 28.7 bits (61), Expect = 4.2
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +2
Query: 326 REDLPMVEYALREGLSAGVGTQIGSKTERLID 421
+ED+ +EY + E ++ +GTQ+ KT +D
Sbjct: 232 QEDVTRIEYLIHEYQNSDIGTQMLKKTRTAVD 263
>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
F22E10.2 protein.
Length = 1324
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -1
Query: 637 GGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRR 491
G Q + T RCL A +L + +M + + + A G ++ ++NR+
Sbjct: 1017 GDQTVDKTFRCLMAMMLCCEGIIMSAQFFPQFVGAKSAAGQMFNLINRQ 1065
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,192,817
Number of Sequences: 27780
Number of extensions: 382346
Number of successful extensions: 939
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 887
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -