Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m22f
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    35   5e-04
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    35   7e-04
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    31   0.009
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    25   0.42 
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...    24   0.98 
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...    24   0.98 
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    22   3.9  
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          22   3.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   5.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.2  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   5.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   6.9  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 35.1 bits (77), Expect = 5e-04
 Identities = 34/118 (28%), Positives = 55/118 (46%)
 Frame = +3

Query: 111 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 290
           M K++   N+ VI HVD GKST T  L+ K G I   R  E +F +    E  +  + K 
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56

Query: 291 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 464
             +    + E +  + I     + ++ K + + +ID+PGH DF   +       D A+
Sbjct: 57  AWVLDKLKAERERGITIDIALWKFETSK-YYVTIIDAPGHRDFIKNMITGTSQADCAV 113


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 34.7 bits (76), Expect = 7e-04
 Identities = 34/118 (28%), Positives = 55/118 (46%)
 Frame = +3

Query: 111 MDKKRNIRNMSVIAHVDHGKSTLTDSLVSKAGIIAGARAGETRFTDTRKDEQDRCITIKS 290
           M K++   N+ VI HVD GKST T  L+ K G I   R  E +F +    E  +  + K 
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGI-DKRTIE-KF-EKEAQEMGKG-SFKY 56

Query: 291 TAISMFFELEEKDLVFITNPDQREKSEKGFLINLIDSPGHVDFSSEVTAALRVTDGAL 464
             +    + E +  + I     + ++ K + + +ID+PGH DF   +       D A+
Sbjct: 57  AWVLDKLKAERERGITIDIALWKFETAK-YYVTIIDAPGHRDFIKNMITGTSQADCAV 113


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 17/73 (23%), Positives = 32/73 (43%)
 Frame = +3

Query: 369 EKGFLINLIDSPGHVDFSSEVTAALRVTDGALXXXXXXXXXXXQTETVLRQAIAERIKPI 548
           E G  +  +D+PGH  F S       +TD  +           QT   +  A   ++  I
Sbjct: 190 ESGERVTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDGVKEQTLQSIEMAKDAKVPII 249

Query: 549 LFMNKMDRALLEL 587
           + +NK+D+  +++
Sbjct: 250 VAINKIDKPNIDI 262



 Score = 29.5 bits (63), Expect = 0.026
 Identities = 10/18 (55%), Positives = 16/18 (88%)
 Frame = +3

Query: 138 MSVIAHVDHGKSTLTDSL 191
           ++++ HVDHGK+TL D+L
Sbjct: 148 VTIMGHVDHGKTTLLDAL 165


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 25.4 bits (53), Expect = 0.42
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 135 NMSVIAHVDHGKSTLTDSL 191
           N+  I HV HGKST+  ++
Sbjct: 44  NIGTIGHVAHGKSTIVKAI 62


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 378 FLINLIDSPGHVDFSSEVTAALRVTDGAL 464
           + + +ID+PGH DF   +       D A+
Sbjct: 12  YYVTIIDAPGHRDFIKNMITGTSQADCAV 40


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +3

Query: 378 FLINLIDSPGHVDFSSEVTAALRVTDGAL 464
           + + +ID+PGH DF   +       D A+
Sbjct: 28  YYVTIIDAPGHRDFIKNMITGTSQADCAV 56


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -2

Query: 116 VHHPTDLVYREIHH 75
           +HHP   + R++HH
Sbjct: 400 LHHPNCKINRKVHH 413


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 3.9
 Identities = 13/44 (29%), Positives = 18/44 (40%)
 Frame = -2

Query: 518 TQYCFSLYTHTRHTVNNHKGSISDTECSCYFRREINVSR*VNQV 387
           T  C S Y  +RH   N   +  +  CS    RE    R  +Q+
Sbjct: 227 TSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKDRRYDQL 270


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 297 ISMFFELEEKDLVFITNPDQREKSEKGFLI 386
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -3

Query: 481 TQSTTTRAP-SVTRSAAVTSEEKSTC 407
           + STTT +P + T+S  V +   STC
Sbjct: 324 SSSTTTTSPMTSTKSTIVRNHLNSTC 349


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 297 ISMFFELEEKDLVFITNPDQREKSEKGFLI 386
           ++MF+     D+  I+N +Q + S  GF I
Sbjct: 527 LNMFYNNFNSDIKSISNNEQVKVSALGFFI 556


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 273 CITIKSTAISMFF 311
           C T+K +A+ M+F
Sbjct: 688 CATVKGSAVDMYF 700


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,230
Number of Sequences: 438
Number of extensions: 3468
Number of successful extensions: 21
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)