Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m19r
(779 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc... 205 6e-54
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo... 57 2e-09
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz... 44 3e-05
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc... 33 0.046
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa... 30 0.43
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||... 30 0.43
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.0
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c... 26 5.3
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po... 26 7.0
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.2
>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 218
Score = 205 bits (500), Expect = 6e-54
Identities = 100/206 (48%), Positives = 132/206 (64%), Gaps = 5/206 (2%)
Frame = -2
Query: 730 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 551
+ +A K TLP LPY YNALEP +S IM LHH KHH TY+NNLN A+EKLA
Sbjct: 16 VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74
Query: 550 GDIDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAVEKDFGSWDNL 386
D++ + L A+KFNGGGHINHS+FW L+P GGKP S L KA+ +GS ++
Sbjct: 75 -DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133
Query: 385 KNQLSTASVAVQGSGWGWLGYNKQMKKLQIATCQNQDPLQATTGLVPLFGIDVWEHAYYL 206
+ +++ A ++QGSGW WL +K L+I T NQD + + P+ GID WEHAYY
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDKD-GSLRITTTANQDTIVKSK---PIIGIDAWEHAYYP 189
Query: 205 QYKNVRADYVKAIFDVANWNDISQRY 128
QY+N +A+Y KAI++V NW + RY
Sbjct: 190 QYENRKAEYFKAIWNVINWKEAESRY 215
>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 220
Score = 57.2 bits (132), Expect = 2e-09
Identities = 37/138 (26%), Positives = 64/138 (46%), Gaps = 16/138 (11%)
Frame = -2
Query: 490 INHSIFWHNL-SPNG-GKPSDV----LTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWL 329
+NH F+ L SP +D+ L ++ FGS+ LK+Q+ +V G GW WL
Sbjct: 76 VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135
Query: 328 GYNKQMKKLQIATCQNQD---------PLQATTGLVPLFGIDVWEHAYYLQY-KNVRADY 179
Y+ + + N P T +VPL +++W++AY Y N + Y
Sbjct: 136 VYSPEKSLFSLLCTYNASNAFLWGTGFPKFRTNAIVPLLCVNLWQYAYLDDYGLNGKKMY 195
Query: 178 VKAIFDVANWNDISQRYE 125
+ +D+ NW ++ R++
Sbjct: 196 ITKWWDMINWTVVNNRFQ 213
>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
S26|Schizosaccharomyces pombe|chr 2|||Manual
Length = 277
Score = 43.6 bits (98), Expect = 3e-05
Identities = 54/231 (23%), Positives = 95/231 (41%), Gaps = 36/231 (15%)
Frame = -2
Query: 700 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 527
HT+P L + N L P+ S E + + +H + LN V +L + I
Sbjct: 39 HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96
Query: 526 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAVEKDFGSWDNLKN 380
L A +F + NH F + + + + KAV ++FGS +NL +
Sbjct: 97 LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156
Query: 379 QLSTASVAVQGSGWGWL---GYNKQ--MKKLQIAT------CQNQDPLQATT-------- 257
++ + G+ W W+ YN+ ++ Q + Q+ DP ++
Sbjct: 157 KIHELASNSFGACWLWIVIDDYNRLNLLRTFQAGSPYLWTRWQSNDPHLISSVPDYSARP 216
Query: 256 ---GLVPLFGIDVWEHAYYLQYKNV-RADYVKAIFDVANWNDISQRYEKAL 116
VP+ + +W HAYY Y + R+ Y+ FD +W+ I +R +L
Sbjct: 217 RKYAHVPILNLCLWNHAYYKDYGLLNRSRYIDTWFDCIDWSVIEERLTNSL 267
>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 781
Score = 33.1 bits (72), Expect = 0.046
Identities = 32/110 (29%), Positives = 47/110 (42%)
Frame = -2
Query: 709 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 530
RQKHT P P +A S HH HH+ N L EK K + ++
Sbjct: 97 RQKHTAPATPIPVSA----------SRHHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142
Query: 529 NLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKN 380
+ +P+ F G IN+ I N S + P + + + K S+ +LKN
Sbjct: 143 SESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDIHKS-QSYQHLKN 189
>SPBC12C2.04 |||NAD binding dehydrogenase family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 384
Score = 29.9 bits (64), Expect = 0.43
Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = -2
Query: 619 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 446
K+HA K+ QA K D +N+A + ++N N+ +FW +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215
>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1101
Score = 29.9 bits (64), Expect = 0.43
Identities = 16/56 (28%), Positives = 29/56 (51%)
Frame = +2
Query: 113 LERFFISLRYIIPVGYIENSFHVVGTNVLVLKIVRVLPYIDSEERDQSSGGLQRIL 280
+ R+ + L II + H +V ++K + +P +D+EER + GLQ I+
Sbjct: 388 IPRYSLFLDQIILLTQEGECQHTYVRSVEIIKNIAEMPTVDAEERSRIFAGLQHII 443
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 3.0
Identities = 9/21 (42%), Positives = 15/21 (71%)
Frame = -2
Query: 286 QNQDPLQATTGLVPLFGIDVW 224
++ DPL+AT+ +PLF + W
Sbjct: 2142 KHTDPLRATSDFIPLFSMQRW 2162
>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 658
Score = 26.2 bits (55), Expect = 5.3
Identities = 8/18 (44%), Positives = 15/18 (83%)
Frame = -3
Query: 267 RPPLDWSRSSESMYGSTR 214
+PPL WS SS +++G+++
Sbjct: 101 KPPLTWSPSSANLFGTSK 118
>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 811
Score = 25.8 bits (54), Expect = 7.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = +2
Query: 521 CKVDNGVDITFSLCLCEFLFSNV 589
C VD+ +I+ SLC EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 9.2
Identities = 13/29 (44%), Positives = 18/29 (62%)
Frame = +2
Query: 599 DISRVMFAVMKTHDFTANDRLQCIVLVRK 685
D V+F+ KT ANDRLQCI+ ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,148,908
Number of Sequences: 5004
Number of extensions: 68444
Number of successful extensions: 194
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -