Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m19f
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyc...   148   5e-37
SPBC3H7.04 |||mitochondrial ribosomal protein subunit S26|Schizo...    36   0.006
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    33   0.031
SPBC16A3.14 |||mitochondrial ribosomal protein subunit S26|Schiz...    30   0.29 
SPBC12C2.04 |||NAD binding dehydrogenase family protein|Schizosa...    30   0.29 
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    26   4.8  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   6.3  
SPAC30C2.05 |erv14||cornichon family protein Erv14|Schizosacchar...    25   8.3  
SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces pombe...    25   8.3  

>SPAC1486.01 |||manganese superoxide dismutase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 218

 Score =  148 bits (359), Expect = 5e-37
 Identities = 71/143 (49%), Positives = 93/143 (65%), Gaps = 5/143 (3%)
 Frame = +3

Query: 171 IRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAK 350
           + +A     K TLP LPY YNALEP +S  IM LHH KHH TY+NNLN A+EKLA     
Sbjct: 16  VSIARGVHTKATLPPLPYAYNALEPALSETIMKLHHDKHHQTYVNNLNAAQEKLADPNL- 74

Query: 351 GDIDTIINLAPALKFNGGGHINHSIFWHNLSP---NGGKP--SDVLTKAVEKDFGSWDNL 515
            D++  + L  A+KFNGGGHINHS+FW  L+P    GGKP  S  L KA+   +GS ++ 
Sbjct: 75  -DLEGEVALQAAIKFNGGGHINHSLFWKILAPQKEGGGKPVTSGSLHKAITSKWGSLEDF 133

Query: 516 KNQLSTASVAVQGSGWGWLGYNK 584
           + +++ A  ++QGSGW WL  +K
Sbjct: 134 QKEMNAALASIQGSGWAWLIVDK 156


>SPBC3H7.04 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 35.5 bits (78), Expect = 0.006
 Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
 Frame = +3

Query: 411 INHSIFWHNL-SPNG-GKPSDV----LTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWL 572
           +NH  F+  L SP      +D+    L   ++  FGS+  LK+Q+     +V G GW WL
Sbjct: 76  VNHDFFFSGLISPERPSADADLGAINLKPGIDASFGSFGELKSQMVDVGNSVFGDGWLWL 135

Query: 573 GYNKQ 587
            Y+ +
Sbjct: 136 VYSPE 140


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 33.1 bits (72), Expect = 0.031
 Identities = 32/110 (29%), Positives = 47/110 (42%)
 Frame = +3

Query: 192 RQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 371
           RQKHT P  P   +A          S HH  HH+   N L    EK      K + ++  
Sbjct: 97  RQKHTAPATPIPVSA----------SRHHKPHHSGLKNLL----EKAMHPGHKSNANSPT 142

Query: 372 NLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDFGSWDNLKN 521
           + +P+  F  G  IN+ I   N S +   P +  +  + K   S+ +LKN
Sbjct: 143 SESPSKGF--GSFINNHILHKNTSSHPSSPVNGKSSDIHKS-QSYQHLKN 189


>SPBC16A3.14 |||mitochondrial ribosomal protein subunit
           S26|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 277

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 32/137 (23%), Positives = 56/137 (40%), Gaps = 13/137 (9%)
 Frame = +3

Query: 201 HTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDIDTIIN 374
           HT+P L  + N L P+ S E + +   +H    +  LN  V   +L  +     I     
Sbjct: 39  HTVPNLS-QRNLL-PLFSPEALDIAWDQHQRQVVKELNDRVKGTELEDSSVFNIIFQTAA 96

Query: 375 L---APALKFNGGGHINHSIFWHNLSPNGG--------KPSDVLTKAVEKDFGSWDNLKN 521
           L   A   +F    + NH  F   +             + +  + KAV ++FGS +NL +
Sbjct: 97  LPEHAATFQFASQAYNNHFFFQSLIGKRAADAKKNSKYEANAAINKAVNENFGSKENLLS 156

Query: 522 QLSTASVAVQGSGWGWL 572
           ++   +    G+ W W+
Sbjct: 157 KIHELASNSFGACWLWI 173


>SPBC12C2.04 |||NAD binding dehydrogenase family
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 384

 Score = 29.9 bits (64), Expect = 0.29
 Identities = 17/59 (28%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +3

Query: 282 KHHATYINNLNVAEEKLAQAQAKGDIDTIINLAPAL-KFNGGGHINHSIFWHNLSPNGG 455
           K+HA           K+ QA  K   D  +N+A  + ++N     N+ +FW  +S +GG
Sbjct: 157 KYHAIISIGYMFRYLKIVQAAKKYVADNNLNIACTIARYNSAYEHNNKLFWWYMSKSGG 215


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 380 CKVDNGVDITFSLCLCEFLFSNV 312
           C VD+  +I+ SLC  EF+ S V
Sbjct: 452 CLVDSFENISHSLCTTEFILSRV 474


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -3

Query: 302  DISRVMFAVMKTHDFTANDRLQCIVLVRK 216
            D   V+F+  KT    ANDRLQCI+  ++
Sbjct: 3138 DQQNVLFSKTKT----ANDRLQCIIQTKQ 3162


>SPAC30C2.05 |erv14||cornichon family protein
           Erv14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 141

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = -3

Query: 440 QVVPKDRVVDVTTTIEFQGWCKVDNGVDITFSLCL 336
           QV+ K  ++D T      G  K DN + +TF L +
Sbjct: 91  QVIHKTHILDATEIFRQLGRHKRDNFIKVTFYLIM 125


>SPBC1271.04c |||deoxyhypusine synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 456 KPSDVLTKAVEKDFGSWDNLK 518
           KPSD+ T+ V  DF  +D  K
Sbjct: 16  KPSDLTTEVVGPDFNKYDERK 36


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,426,027
Number of Sequences: 5004
Number of extensions: 48649
Number of successful extensions: 128
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)