Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m19f
         (595 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0512 + 14913356-14913769,14915907-14916032,14916129-149161...   111   3e-25
06_01_0314 + 2255908-2255979,2256354-2256512,2257021-2257209,225...    78   6e-15
06_01_0109 - 863806-864045,864448-864566,864680-864851,864914-86...    71   5e-13
01_06_0405 + 29103723-29103839,29103928-29104012,29104572-291046...    30   1.6  
06_01_0286 - 2094920-2097805                                           29   2.1  
01_06_0583 + 30400317-30401681                                         27   8.5  

>05_03_0512 +
           14913356-14913769,14915907-14916032,14916129-14916185,
           14916950-14917027,14917681-14917773
          Length = 255

 Score =  111 bits (268), Expect = 3e-25
 Identities = 71/171 (41%), Positives = 91/171 (53%), Gaps = 30/171 (17%)
 Frame = +3

Query: 171 IRVAGASRQKHT--LPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQ 344
           +  A A+R   T  LP+LPY+Y ALEP IS EIM LHH KHHATY+ N N A E+L  A 
Sbjct: 19  LAAAAAARGVTTVALPDLPYDYGALEPAISGEIMRLHHQKHHATYVANYNKALEQLDAAV 78

Query: 345 AKGDIDTIINLAPALKFNGGGHINH------------SIFW--------------HNLSP 446
           AKGD   I++L  A+KFNGGG                S F+                L  
Sbjct: 79  AKGDAPAIVHLQSAIKFNGGGEAKSRPPYPFLAYGFLSFFFFVLFIAGDAGGGGSEELGG 138

Query: 447 NGG--KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSGWGWLGYNKQMK 593
            GG   P   L  A+++DFGS++ L  ++S    A+QGSGW WL  +K+ K
Sbjct: 139 EGGGDPPHAKLGWAIDEDFGSFEALVKKMSAEGAALQGSGWVWLALDKEAK 189


>06_01_0314 +
           2255908-2255979,2256354-2256512,2257021-2257209,
           2257390-2257561,2257711-2257784,2257818-2257904,
           2257975-2257998,2258100-2258225
          Length = 300

 Score = 77.8 bits (183), Expect = 6e-15
 Identities = 42/127 (33%), Positives = 71/127 (55%), Gaps = 8/127 (6%)
 Frame = +3

Query: 216 LPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKG-DIDTIINLA---- 380
           L +  +ALEP IS+  + LH  KH   Y+++LN   ++LA +   G  ++ +I  A    
Sbjct: 73  LVFTTDALEPYISKRTVELHWGKHQQDYVDSLN---KQLATSMFYGYTLEELIKEAYNNG 129

Query: 381 -PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQ 551
            P  ++N    + NH  FW ++ P GG  P   + + +EKDFGS+ N + +   +++++ 
Sbjct: 130 NPLPEYNNAAQVWNHHFFWESMQPEGGGSPGRGVLQQIEKDFGSFTNFREEFIRSALSLL 189

Query: 552 GSGWGWL 572
           GSGW WL
Sbjct: 190 GSGWVWL 196


>06_01_0109 -
           863806-864045,864448-864566,864680-864851,864914-865108,
           865179-865388,865738-865926
          Length = 374

 Score = 71.3 bits (167), Expect = 5e-13
 Identities = 45/128 (35%), Positives = 62/128 (48%), Gaps = 7/128 (5%)
 Frame = +3

Query: 216 LPYEYNALEPVISREIMSLHHSKHHATYINNLNV----AE-EKLAQAQAKGDIDTIINLA 380
           LPY  +ALEP IS+E +  H   H   ++  LN     +E E ++  Q           A
Sbjct: 129 LPYPSDALEPYISKETVEQHWGVHQNIHVERLNGMIGGSEWEGMSLGQMMLSSFNEGREA 188

Query: 381 PALKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQG 554
           P   F     I NH  +W ++ P GG KP + L K + +DFGS+D +  Q   A+    G
Sbjct: 189 PHPPFFHAAQIWNHDFYWRSMQPGGGGKPPERLLKFINRDFGSYDGMIRQFMDAASTQFG 248

Query: 555 SGWGWLGY 578
           SGW WL Y
Sbjct: 249 SGWVWLCY 256


>01_06_0405 +
           29103723-29103839,29103928-29104012,29104572-29104674,
           29104798-29104882,29105414-29105497,29105627-29105730,
           29106522-29106783,29106978-29107414,29107637-29107718,
           29109913-29110089,29110640-29110732,29110812-29110877,
           29110992-29111038,29111165-29111430,29111443-29111845,
           29111992-29112376
          Length = 931

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 17/45 (37%), Positives = 23/45 (51%)
 Frame = -3

Query: 380 CKVDNGVDITFSLCLCEFLFSNV*IVDISRVMFAVMKTHDFTAND 246
           C VD  V + +    CEF    V + DISR++F   K  +F  ND
Sbjct: 108 CTVDGHVKL-YRSPFCEFCDEWVEVADISRLLFKFYKGIEFGEND 151


>06_01_0286 - 2094920-2097805
          Length = 961

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 18/56 (32%), Positives = 25/56 (44%)
 Frame = +3

Query: 204 TLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTII 371
           +L  L   +N L  +I   + SLH   H     NNL+    + +Q Q  GD D  I
Sbjct: 807 SLESLDLSWNRLSGIIPESMTSLHLLSHLNMSYNNLSGMVPQGSQLQTLGDEDPYI 862


>01_06_0583 + 30400317-30401681
          Length = 454

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = -2

Query: 573 QANPSLSPVLPQKLSTVDSL 514
           +ANPSLS V+P +L+T+ SL
Sbjct: 140 RANPSLSGVMPPQLATLRSL 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,028,632
Number of Sequences: 37544
Number of extensions: 338462
Number of successful extensions: 903
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 899
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1411925004
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)