Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m19f
(595 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondria... 163 6e-41
At3g56350.1 68416.m06266 superoxide dismutase [Mn], putative / m... 151 5e-37
At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / i... 96 2e-20
At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron supero... 85 3e-17
At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast ... 83 2e-16
At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast ... 83 2e-16
At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast ... 83 2e-16
At1g11170.2 68414.m01279 expressed protein contains Pfam profile... 30 1.3
At1g11170.1 68414.m01280 expressed protein contains Pfam profile... 30 1.3
At1g61240.2 68414.m06901 expressed protein contains Pfam profile... 29 1.8
At1g61240.1 68414.m06900 expressed protein contains Pfam profile... 29 1.8
At1g08040.1 68414.m00878 expressed protein contains Pfam profile... 29 3.1
At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding ... 28 4.1
At2g37890.1 68415.m04651 mitochondrial substrate carrier family ... 28 4.1
At1g32950.1 68414.m04058 subtilase family protein contains simil... 28 4.1
At1g08210.1 68414.m00907 aspartyl protease family protein contai... 28 4.1
At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal hydrolase-r... 27 7.1
At5g65430.2 68418.m08229 14-3-3 protein GF14 kappa (GRF8) identi... 27 9.4
At5g65430.1 68418.m08228 14-3-3 protein GF14 kappa (GRF8) identi... 27 9.4
At4g05530.1 68417.m00842 short-chain dehydrogenase/reductase (SD... 27 9.4
At3g27990.1 68416.m03493 expressed protein Unusual gene which co... 27 9.4
At2g28310.2 68415.m03438 expressed protein contains Pfam profile... 27 9.4
At2g28310.1 68415.m03437 expressed protein contains Pfam profile... 27 9.4
>At3g10920.1 68416.m01317 superoxide dismutase [Mn], mitochondrial
(SODA) / manganese superoxide dismutase (MSD1) identical
to manganese superoxide dismutase [Arabidopsis thaliana]
gi|3273751|gb|AAC24832
Length = 231
Score = 163 bits (397), Expect = 6e-41
Identities = 77/146 (52%), Positives = 99/146 (67%), Gaps = 4/146 (2%)
Frame = +3
Query: 168 LIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQA 347
L+R+ G Q TLP+LPY+Y ALEP IS EIM +HH KHH Y+ N N A E+L QA
Sbjct: 22 LLRIRGI--QTFTLPDLPYDYGALEPAISGEIMQIHHQKHHQAYVTNYNNALEQLDQAVN 79
Query: 348 KGDIDTIINLAPALKFNGGGHINHSIFWHNLSPN---GGK-PSDVLTKAVEKDFGSWDNL 515
KGD T++ L A+KFNGGGH+NHSIFW NL+P+ GG+ P L A++ FGS + L
Sbjct: 80 KGDASTVVKLQSAIKFNGGGHVNHSIFWKNLAPSSEGGGEPPKGSLGSAIDAHFGSLEGL 139
Query: 516 KNQLSTASVAVQGSGWGWLGYNKQMK 593
++S AVQGSGW WLG +K++K
Sbjct: 140 VKKMSAEGAAVQGSGWVWLGLDKELK 165
>At3g56350.1 68416.m06266 superoxide dismutase [Mn], putative /
manganese superoxide dismutase, putative similar to
manganese superoxide dismutase (MSD1) [Arabidopsis
thaliana] gi|3273751|gb|AAC24832
Length = 241
Score = 151 bits (365), Expect = 5e-37
Identities = 68/139 (48%), Positives = 90/139 (64%), Gaps = 4/139 (2%)
Frame = +3
Query: 189 SRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDIDTI 368
S + +LP+LPY Y+ALEP IS EIM LHH KHH TY+ N A L A A GD ++
Sbjct: 32 SMKTASLPDLPYAYDALEPAISEEIMRLHHQKHHQTYVTQYNKALNSLRSAMADGDHSSV 91
Query: 369 INLAPALKFNGGGHINHSIFWHNLSP---NGGK-PSDVLTKAVEKDFGSWDNLKNQLSTA 536
+ L +KFNGGGH+NH+IFW NL+P GGK P D L A++ FGS + L +++
Sbjct: 92 VKLQSLIKFNGGGHVNHAIFWKNLAPVHEGGGKPPHDPLASAIDAHFGSLEGLIQKMNAE 151
Query: 537 SVAVQGSGWGWLGYNKQMK 593
AVQGSGW W G ++++K
Sbjct: 152 GAAVQGSGWVWFGLDRELK 170
>At5g51100.1 68418.m06335 superoxide dismutase [Fe], putative / iron
superoxide dismutase, putative similar to Fe-superoxide
dismutase precursor [Medicago sativa]
gi|16974682|gb|AAL32441
Length = 305
Score = 95.9 bits (228), Expect = 2e-20
Identities = 51/150 (34%), Positives = 79/150 (52%), Gaps = 8/150 (5%)
Frame = +3
Query: 153 QRIGSLIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKL 332
+R+G+ + V+G L PY +ALEP +SRE + H KHH TY+ NLN ++ L
Sbjct: 37 RRLGTKVAVSGVITAGFELKPPPYPLDALEPHMSRETLDYHWGKHHKTYVENLN--KQIL 94
Query: 333 AQAQAKGDIDTII-------NLAPALKFNGGGHINHSIFWHNLSP-NGGKPSDVLTKAVE 488
++ ++ N+ PA N NH FW ++ P GGKP+ L + +E
Sbjct: 95 GTDLDALSLEEVVLLSYNKGNMLPAFN-NAAQAWNHEFFWESIQPGGGGKPTGELLRLIE 153
Query: 489 KDFGSWDNLKNQLSTASVAVQGSGWGWLGY 578
+DFGS++ + +A+ + GSGW WL Y
Sbjct: 154 RDFGSFEEFLERFKSAAASNFGSGWTWLAY 183
>At5g23310.1 68418.m02727 superoxide dismutase [Fe] / iron
superoxide dismutase 3 (FSD3) identical to iron
superoxide dismutase 3 [Arabidopsis thaliana]
gi|3273757|gb|AAC24834
Length = 263
Score = 85.0 bits (201), Expect = 3e-17
Identities = 42/124 (33%), Positives = 67/124 (54%), Gaps = 6/124 (4%)
Frame = +3
Query: 219 PYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKGDI--DTIINLAPA 386
PY +ALEP +SR + +H KHH Y++NLN + ++ ++ T N P
Sbjct: 56 PYPLDALEPYMSRRTLEVHWGKHHRGYVDNLNKQLGKDDRLYGYTMEELIKATYNNGNPL 115
Query: 387 LKFNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQLSTASVAVQGSG 560
+FN + NH FW ++ P GG P + + ++KDFGS+ N + + + A++ GSG
Sbjct: 116 PEFNNAAQVYNHDFFWESMQPGGGDTPQKGVLEQIDKDFGSFTNFREKFTNAALTQFGSG 175
Query: 561 WGWL 572
W WL
Sbjct: 176 WVWL 179
>At4g25100.3 68417.m03608 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 82.6 bits (195), Expect = 2e-16
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Frame = +3
Query: 180 AGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKG 353
+ A + L P+ +ALEP +S++ + H KHH Y++NL V +L +
Sbjct: 4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEH 63
Query: 354 DIDTIINLAPALK-FNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQ 524
I + N L FN NH FW ++ P GG KPS L +E+DF S++ +
Sbjct: 64 IIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEE 123
Query: 525 LSTASVAVQGSGWGWLGY-NKQMK 593
+ A+ G+GW WL Y N+++K
Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLK 147
>At4g25100.2 68417.m03607 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 82.6 bits (195), Expect = 2e-16
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Frame = +3
Query: 180 AGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKG 353
+ A + L P+ +ALEP +S++ + H KHH Y++NL V +L +
Sbjct: 4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEH 63
Query: 354 DIDTIINLAPALK-FNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQ 524
I + N L FN NH FW ++ P GG KPS L +E+DF S++ +
Sbjct: 64 IIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEE 123
Query: 525 LSTASVAVQGSGWGWLGY-NKQMK 593
+ A+ G+GW WL Y N+++K
Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLK 147
>At4g25100.1 68417.m03606 superoxide dismutase [Fe], chloroplast
(SODB) / iron superoxide dismutase (FSD1) identical to
Fe-superoxide dismutase [Arabidopsis thaliana]
gi|166700|gb|AAA32791; supported by cDNA, Ceres:32935
Length = 212
Score = 82.6 bits (195), Expect = 2e-16
Identities = 46/144 (31%), Positives = 72/144 (50%), Gaps = 6/144 (4%)
Frame = +3
Query: 180 AGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLN--VAEEKLAQAQAKG 353
+ A + L P+ +ALEP +S++ + H KHH Y++NL V +L +
Sbjct: 4 SSAVTANYVLKPPPFALDALEPHMSKQTLEFHWGKHHRAYVDNLKKQVLGTELEGKPLEH 63
Query: 354 DIDTIINLAPALK-FNGGGHI-NHSIFWHNLSPNGG-KPSDVLTKAVEKDFGSWDNLKNQ 524
I + N L FN NH FW ++ P GG KPS L +E+DF S++ +
Sbjct: 64 IIHSTYNNGDLLPAFNNAAQAWNHEFFWESMKPGGGGKPSGELLALLERDFTSYEKFYEE 123
Query: 525 LSTASVAVQGSGWGWLGY-NKQMK 593
+ A+ G+GW WL Y N+++K
Sbjct: 124 FNAAAATQFGAGWAWLAYSNEKLK 147
>At1g11170.2 68414.m01279 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 335
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 395 QWW---WSHQPLDLLAQPVTKWWQA 460
+WW WS + + ++AQ TKWW A
Sbjct: 157 KWWDLEWSSKSIHIVAQNQTKWWFA 181
>At1g11170.1 68414.m01280 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 438
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/25 (44%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
Frame = +2
Query: 395 QWW---WSHQPLDLLAQPVTKWWQA 460
+WW WS + + ++AQ TKWW A
Sbjct: 157 KWWDLEWSSKSIHIVAQNQTKWWFA 181
>At1g61240.2 68414.m06901 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +2
Query: 395 QWW---WSHQPLDLLAQPVTKWWQA 460
QWW WS + + ++A TKWW A
Sbjct: 154 QWWDLEWSSKAIHIVAHNQTKWWFA 178
>At1g61240.1 68414.m06900 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 425
Score = 29.5 bits (63), Expect = 1.8
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Frame = +2
Query: 395 QWW---WSHQPLDLLAQPVTKWWQA 460
QWW WS + + ++A TKWW A
Sbjct: 154 QWWDLEWSSKAIHIVAHNQTKWWFA 178
>At1g08040.1 68414.m00878 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 382
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +2
Query: 365 HYQPCTSLEIQWWWSHQPLDLLAQPVTKWWQA 460
HY T+ Q+ WS + + A+ TKWW A
Sbjct: 155 HYDGRTTEWDQFEWSKNAIHISAKKQTKWWYA 186
>At3g19040.1 68416.m02418 ubiquitin family protein / DNA-binding
bromodomain-containing protein low similarity to
SP|P51123 Transcription initiation factor TFIID 230 kDa
subunit {Drosophila melanogaster}; contains Pfam
profiles: PF00439 bromodomain, PF00240: Ubiquitin family
Length = 1700
Score = 28.3 bits (60), Expect = 4.1
Identities = 15/64 (23%), Positives = 29/64 (45%)
Frame = +3
Query: 183 GASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINNLNVAEEKLAQAQAKGDID 362
G ++H E ++ EPV+ +E + H K A+ + N N + Q +K D +
Sbjct: 27 GGQEKEHVPVEKSFDSEEREPVVLKEEKPVKHEK-EASILGNKNQMDTGDVQEVSKNDFE 85
Query: 363 TIIN 374
++
Sbjct: 86 ATLD 89
>At2g37890.1 68415.m04651 mitochondrial substrate carrier family
protein contains Pfam profile: PF00153 mitochondrial
carrier protein
Length = 337
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 348 KGDIDTIINLAPALKFNGGGHINHSIFWHNLSPN 449
KG T++ + P+L N + + +FWH+ PN
Sbjct: 206 KGLGATLLGVGPSLAINFAAYESMKLFWHSHRPN 239
>At1g32950.1 68414.m04058 subtilase family protein contains
similarity to SBT1 GI:1771160 from [Lycopersicon
esculentum]
Length = 773
Score = 28.3 bits (60), Expect = 4.1
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 499 PKSFSTALVRTSEGLPPFGDRLCQKIEWLM*PPPLNFKAG 380
P +F +A+V T+ PFG+++ + L P P ++ G
Sbjct: 573 PAAFRSAIVTTAWRTDPFGEQIAAESSSLKVPDPFDYGGG 612
>At1g08210.1 68414.m00907 aspartyl protease family protein contains
Pfam profile PF00026: Eukaryotic aspartyl protease;
similar to CND41, chloroplast nucleoid DNA binding
protein (GI:2541876) {Nicotiana tabacum}
Length = 492
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/53 (30%), Positives = 25/53 (47%)
Frame = -3
Query: 503 GSKVFLNGFGENIRRLATIW*QVVPKDRVVDVTTTIEFQGWCKVDNGVDITFS 345
GS ++ GF R TI +V KD+VV + GW + D +++ S
Sbjct: 395 GSSIWCIGFQRMSHRRITILGDLVLKDKVVVYDLVRQRIGWAEYDCSLEVNVS 447
>At1g52430.1 68414.m05919 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1136
Score = 27.5 bits (58), Expect = 7.1
Identities = 19/76 (25%), Positives = 34/76 (44%)
Frame = +3
Query: 129 SLVIMLMSQRIGSLIRVAGASRQKHTLPELPYEYNALEPVISREIMSLHHSKHHATYINN 308
S ++++ + RI L +A S Y ++P + EIM++ +
Sbjct: 651 SKILLIENSRISLLNNLARLS----AFDNRTYILQLMKPFLLNEIMNMERKAKADAVAAD 706
Query: 309 LNVAEEKLAQAQAKGD 356
L + EEK AQ++ K D
Sbjct: 707 LALEEEKKAQSKKKND 722
>At5g65430.2 68418.m08229 14-3-3 protein GF14 kappa (GRF8) identical
to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from
[Arabidopsis thaliana]
Length = 246
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 318 AEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDF 497
AE+ + +A D+ + +LAP G +N S+F++ + + K + +A E+
Sbjct: 151 AEDTMIAYKAAQDV-AVADLAPTHPIRLGLALNFSVFYYEILNSSEKACSMAKQAFEEAI 209
Query: 498 GSWDNL 515
D L
Sbjct: 210 AELDTL 215
>At5g65430.1 68418.m08228 14-3-3 protein GF14 kappa (GRF8) identical
to 14-3-3 protein GF14 kappa GI:5802794, SP:P48348 from
[Arabidopsis thaliana]
Length = 248
Score = 27.1 bits (57), Expect = 9.4
Identities = 16/66 (24%), Positives = 31/66 (46%)
Frame = +3
Query: 318 AEEKLAQAQAKGDIDTIINLAPALKFNGGGHINHSIFWHNLSPNGGKPSDVLTKAVEKDF 497
AE+ + +A D+ + +LAP G +N S+F++ + + K + +A E+
Sbjct: 151 AEDTMIAYKAAQDV-AVADLAPTHPIRLGLALNFSVFYYEILNSSEKACSMAKQAFEEAI 209
Query: 498 GSWDNL 515
D L
Sbjct: 210 AELDTL 215
>At4g05530.1 68417.m00842 short-chain dehydrogenase/reductase (SDR)
family protein similar to peroxisomal short-chain
alcohol dehydrogenase GI:4105190 from [Homo sapiens]
Length = 254
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -2
Query: 585 VCCSQANPSLSPVLPQKLSTVDSL 514
VC + ANPS P+L K + +D L
Sbjct: 93 VCNAAANPSTDPILSSKEAVLDKL 116
>At3g27990.1 68416.m03493 expressed protein Unusual gene which
contains a pectinesterase gene within a downstream UTR
intron, transcribed on the opposite strand; supported by
cDNA gi:14596042
Length = 91
Score = 27.1 bits (57), Expect = 9.4
Identities = 18/54 (33%), Positives = 27/54 (50%)
Frame = -2
Query: 558 LSPVLPQKLSTVDSLSYPRIQSLSQRLW*EHQKACHHLVTGCAKRSSG*CDHHH 397
L PVL ++ +++ S P ++ SQ H HH +T A S+ DHHH
Sbjct: 28 LLPVLVKQETSLRLSSMPLVRDTSQ-----HHSHLHHQLTPAAFNSAE-SDHHH 75
>At2g28310.2 68415.m03438 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 374
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 365 HYQPCTSLEIQWWWSHQPLDLLAQPVTKWWQA 460
HY T+ Q+ WS + + + TKWW A
Sbjct: 148 HYDGRTTEWDQFEWSKSAIHISTRKQTKWWYA 179
>At2g28310.1 68415.m03437 expressed protein contains Pfam profile
PF05212: Protein of unknown function (DUF707)
Length = 374
Score = 27.1 bits (57), Expect = 9.4
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +2
Query: 365 HYQPCTSLEIQWWWSHQPLDLLAQPVTKWWQA 460
HY T+ Q+ WS + + + TKWW A
Sbjct: 148 HYDGRTTEWDQFEWSKSAIHISTRKQTKWWYA 179
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,865,768
Number of Sequences: 28952
Number of extensions: 268807
Number of successful extensions: 725
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1180950720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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