Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m17r
(708 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 32 0.070
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.65
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 28 1.5
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 27 2.6
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 27 3.5
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 26 4.6
SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual 26 4.6
SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces... 26 6.1
SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyce... 26 6.1
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 25 8.0
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 32.3 bits (70), Expect = 0.070
Identities = 24/89 (26%), Positives = 39/89 (43%)
Frame = -2
Query: 395 SRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLSDXXXXXXXXX 216
S +V + SS S P+S TT+ T P S SSS++ S + S++ S
Sbjct: 128 SSSSVSSTTSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSS 187
Query: 215 XXXXXTQLKSSIG*RTPSRSIDTVSSSAN 129
+ SS + S S+ SS+++
Sbjct: 188 SSSSSSSSSSSSSSSSSSSSVPITSSTSS 216
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.1 bits (62), Expect = 0.65
Identities = 11/29 (37%), Positives = 14/29 (48%)
Frame = -1
Query: 162 PIDRYRQQQCKFTMPSICRPSFCGPLTGT 76
P + R Q C+ P +C P C P T T
Sbjct: 281 PCGKTRGQDCEHPCPLLCHPGPCPPCTAT 309
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 27.9 bits (59), Expect = 1.5
Identities = 23/97 (23%), Positives = 47/97 (48%)
Frame = -2
Query: 545 YGLTLFTTNLFRTALFLHAQLRQFLDRGCSL*SAGETSTISLAPWWMVASSRQTVPTRKD 366
Y T+ +T++ + + F+ S S+ +S+ S +P +SS ++ + K
Sbjct: 123 YSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSS-SP---SSSSSKSSSSSKS 178
Query: 365 GSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNA 255
SS S + ++S + +S SSS++ S PS++
Sbjct: 179 SSSSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSS 215
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 27.1 bits (57), Expect = 2.6
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = -3
Query: 382 YRRGRMVQVYPDQLRETLPREQSPVRILRPRM-VHFVKPRHQ 260
+ G + ++ D + T PRE SPV RP + F+K RH+
Sbjct: 137 FLEGPVEEIPLDDIEPTSPREASPVFNGRPPIPPEFLKSRHK 178
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 26.6 bits (56), Expect = 3.5
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -2
Query: 371 KDGSSLS*PTSRDTTSGTEPRSDSSSTNGSF 279
K+G L+ S DT+S T P S S GSF
Sbjct: 148 KEGRQLTTENSSDTSSMTHPVQPSPSVLGSF 178
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.2 bits (55), Expect = 4.6
Identities = 21/52 (40%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -3
Query: 571 HNCLD*SRSMALHSSPRIYSGLHYSSMP--NCVNSWTVGAPYDQLERPQQFP 422
+N D SR+ SSP I S Y SMP N V+S + AP QFP
Sbjct: 370 NNIFDVSRNNHEVSSPLIQSPGSYVSMPSINMVSSLPISAPVPNSN--SQFP 419
>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1828
Score = 26.2 bits (55), Expect = 4.6
Identities = 17/66 (25%), Positives = 35/66 (53%)
Frame = -1
Query: 351 LTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMDIINNLNDVFMVNSAEVIDWVK 172
L++ ++ ++ N P+ +H + S I+R+F F D + VF +N +E++ W+
Sbjct: 424 LSSLQQLFVENALPYSEALH--LLDS---IERSFRLFNDSTVFDDTVFALNISEILSWIL 478
Query: 171 NPVPID 154
+ V D
Sbjct: 479 SSVVRD 484
>SPAC19D5.01 |pyp2||tyrosine phosphatase Pyp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 711
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -1
Query: 303 FFVHEWFISSNPAIK--RAFVRFMDIINNLNDVFMVNSAEV 187
F+VH WF ++P I+ +R +D + N +F+ SA V
Sbjct: 594 FWVHTWFDKTHPDIESITGIIRCIDKVPNDGPMFVHCSAGV 634
>SPBC1105.10 |rav1||RAVE complex subunit Rav1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1297
Score = 25.8 bits (54), Expect = 6.1
Identities = 14/41 (34%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
Frame = -1
Query: 294 HEWFIS-SNPAIK-RAFVRFMDIINNLNDVFMVNSAEVIDW 178
H WF S SN A A +RF+D +N ++ + ++ +V+ W
Sbjct: 510 HAWFWSVSNEAHDGSAVLRFIDRVNFTKNLNIASAVDVMGW 550
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.4 bits (53), Expect = 8.0
Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
Frame = -2
Query: 440 ETSTISLAPWWMVASS-RQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPP 264
E T+S + ++SS + T D + + P + D S NG + PP
Sbjct: 360 ENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESENGKSKFPPP 419
Query: 263 SNALLS 246
S L++
Sbjct: 420 SQTLVT 425
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,177,216
Number of Sequences: 5004
Number of extensions: 71255
Number of successful extensions: 237
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 217
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 236
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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