Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m17r
(708 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-... 102 2e-22
U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical p... 77 2e-14
U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical p... 77 2e-14
U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical pr... 77 2e-14
U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1 dual-specif... 33 0.15
U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical pr... 30 1.4
U40060-9|AAA81147.1| 111|Caenorhabditis elegans Hypothetical pr... 29 4.3
AL021066-1|CAH10789.1| 181|Caenorhabditis elegans Hypothetical ... 29 4.3
AC006629-8|ABC48258.1| 312|Caenorhabditis elegans Hypothetical ... 29 4.3
Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical p... 28 5.7
Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical pr... 28 5.7
AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical ... 28 5.7
Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical pr... 28 7.5
AL021492-1|CAA16377.1| 179|Caenorhabditis elegans Hypothetical ... 28 7.5
AF089729-1|AAD04156.1| 458|Caenorhabditis elegans SMG-7 protein. 28 7.5
AC024204-5|AAF36043.1| 458|Caenorhabditis elegans Suppressor wi... 28 7.5
AJ276590-1|CAB91651.1| 679|Caenorhabditis elegans LET-413 prote... 27 9.9
AF068716-10|AAC17752.2| 679|Caenorhabditis elegans Lethal prote... 27 9.9
AF068716-9|AAT81195.1| 699|Caenorhabditis elegans Lethal protei... 27 9.9
>U40410-2|AAL27229.1| 1876|Caenorhabditis elegans Lin-12 and glp-1
x-hybridizingprotein 1, isoform a protein.
Length = 1876
Score = 102 bits (245), Expect = 2e-22
Identities = 74/263 (28%), Positives = 121/263 (46%), Gaps = 28/263 (10%)
Frame = -1
Query: 708 KRQMAHFASIPASAIKGVRIPFLQMSGNTXFQVMADFDLLYDCTWPTTALTNPGL----- 544
+R +A F P I G+R P L + G+ F++M + L W + NPG+
Sbjct: 1615 RRILAKFGGAPEEEIVGIRSPQLALGGDNQFEMMIGAEFL----WDNSMSANPGIHGEPF 1670
Query: 543 WPYTLHHESIQDCIIPPCPTASIPGPWVLPMISW-----RDLNNF-PCSMVDGCFFTPDR 382
WP T+ ++ DC CP +S PG W +P+ + +++F SM+ +
Sbjct: 1671 WPQTMDYQVAWDCNEASCPKSSFPGVWSVPLNQFYGSYMSQIDSFRRSSMLRAAVDLNNT 1730
Query: 381 TDEEGWFKFILTNFERHYLGNRAPFGFFVHEWFISSNPAIK--RAFVRFMDIINNLNDVF 208
DE + I NFER Y NRAP+ ++ F+ K +A +F++ ++ DV+
Sbjct: 1731 VDE--LEEIITRNFERSYSANRAPYVLSLNADFLQLGGHNKGMKAVQKFLNRMSAQKDVY 1788
Query: 207 MVNSAEVIDWVKNPVPIDRYRQQQ-------CKFTM-----PSICR---PSFCGPLTGTH 73
+V ++IDW+K PVPI + + C T+ PS+ P+ C T +
Sbjct: 1789 IVTIKQLIDWMKRPVPISEMKSVRGKSKAVGCPITLSFNRNPSLSTCDIPNKCLYSTPSL 1848
Query: 72 NQLSYYMTICNTCPRNYPWVGNP 4
+ + C CP YPW+ NP
Sbjct: 1849 SSQEHQFLTCLPCPTMYPWLENP 1871
>U28735-11|AAM69114.1| 358|Caenorhabditis elegans Hypothetical
protein F48E3.8c protein.
Length = 358
Score = 76.6 bits (180), Expect = 2e-14
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 7/239 (2%)
Frame = -1
Query: 708 KRQMAHFASIPASAIKGVRIPFLQMSGNTXFQVMADFDLLYDCTWPTTALTNPGLWPYTL 529
+ +A F+ I S I G R P L++ G+ +++M++ + +D + L + WP TL
Sbjct: 142 RETLAEFSFIDRSHIIGTRAPELKIGGDAQYRMMSENNFTFD----NSMLVSSPYWPQTL 197
Query: 528 HHESIQDCIIPPCPTASIPGPWVLPMISWRDLNNFPCSMVDGCFFTPDRTDEEGWFKFIL 349
H+ +C CPT S W +P+ + + + + D D K +
Sbjct: 198 DHKLAWECD-GNCPTQSHKAIWEIPIQNIQANDTRWYKTLTRAMKPFDSRDSVT--KMLQ 254
Query: 348 TNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMDIINNLNDVFMVNSAEVIDWVKN 169
NF HY N N A+ A F+ I DVF+V +++ID+++N
Sbjct: 255 RNFMNHYKTNH--------------NGAVY-ALRDFLKFIVQKQDVFVVTGSQIIDYMRN 299
Query: 168 PVPIDR---YRQQQCKFTM---PSIC-RPSFCGPLTGTHNQLSYYMTICNTCPRNYPWV 13
PV ++ R QCK M + C P+ C Q ++ +C CP++YPW+
Sbjct: 300 PVDLNNIKSLRSWQCKPQMKDEANPCENPTTCSFSGRARGQFAHSFRMCGVCPKSYPWI 358
>U28735-10|AAM69112.1| 2427|Caenorhabditis elegans Hypothetical
protein F48E3.8a protein.
Length = 2427
Score = 76.6 bits (180), Expect = 2e-14
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 7/239 (2%)
Frame = -1
Query: 708 KRQMAHFASIPASAIKGVRIPFLQMSGNTXFQVMADFDLLYDCTWPTTALTNPGLWPYTL 529
+ +A F+ I S I G R P L++ G+ +++M++ + +D + L + WP TL
Sbjct: 2211 RETLAEFSFIDRSHIIGTRAPELKIGGDAQYRMMSENNFTFD----NSMLVSSPYWPQTL 2266
Query: 528 HHESIQDCIIPPCPTASIPGPWVLPMISWRDLNNFPCSMVDGCFFTPDRTDEEGWFKFIL 349
H+ +C CPT S W +P+ + + + + D D K +
Sbjct: 2267 DHKLAWECD-GNCPTQSHKAIWEIPIQNIQANDTRWYKTLTRAMKPFDSRDSVT--KMLQ 2323
Query: 348 TNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMDIINNLNDVFMVNSAEVIDWVKN 169
NF HY N N A+ A F+ I DVF+V +++ID+++N
Sbjct: 2324 RNFMNHYKTNH--------------NGAVY-ALRDFLKFIVQKQDVFVVTGSQIIDYMRN 2368
Query: 168 PVPIDR---YRQQQCKFTM---PSIC-RPSFCGPLTGTHNQLSYYMTICNTCPRNYPWV 13
PV ++ R QCK M + C P+ C Q ++ +C CP++YPW+
Sbjct: 2369 PVDLNNIKSLRSWQCKPQMKDEANPCENPTTCSFSGRARGQFAHSFRMCGVCPKSYPWI 2427
>U28735-9|AAM69113.1| 1299|Caenorhabditis elegans Hypothetical protein
F48E3.8b protein.
Length = 1299
Score = 76.6 bits (180), Expect = 2e-14
Identities = 62/239 (25%), Positives = 105/239 (43%), Gaps = 7/239 (2%)
Frame = -1
Query: 708 KRQMAHFASIPASAIKGVRIPFLQMSGNTXFQVMADFDLLYDCTWPTTALTNPGLWPYTL 529
+ +A F+ I S I G R P L++ G+ +++M++ + +D + L + WP TL
Sbjct: 1083 RETLAEFSFIDRSHIIGTRAPELKIGGDAQYRMMSENNFTFD----NSMLVSSPYWPQTL 1138
Query: 528 HHESIQDCIIPPCPTASIPGPWVLPMISWRDLNNFPCSMVDGCFFTPDRTDEEGWFKFIL 349
H+ +C CPT S W +P+ + + + + D D K +
Sbjct: 1139 DHKLAWECD-GNCPTQSHKAIWEIPIQNIQANDTRWYKTLTRAMKPFDSRDSVT--KMLQ 1195
Query: 348 TNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMDIINNLNDVFMVNSAEVIDWVKN 169
NF HY N N A+ A F+ I DVF+V +++ID+++N
Sbjct: 1196 RNFMNHYKTNH--------------NGAVY-ALRDFLKFIVQKQDVFVVTGSQIIDYMRN 1240
Query: 168 PVPIDR---YRQQQCKFTM---PSIC-RPSFCGPLTGTHNQLSYYMTICNTCPRNYPWV 13
PV ++ R QCK M + C P+ C Q ++ +C CP++YPW+
Sbjct: 1241 PVDLNNIKSLRSWQCKPQMKDEANPCENPTTCSFSGRARGQFAHSFRMCGVCPKSYPWI 1299
>U23178-4|AAK68300.1| 606|Caenorhabditis elegans Vh1
dual-specificity phosphatasefamily protein 1, isoform b
protein.
Length = 606
Score = 33.5 bits (73), Expect = 0.15
Identities = 17/42 (40%), Positives = 22/42 (52%)
Frame = -2
Query: 398 SSRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQ 273
SS T P +K G L + T+ + P S SS TNG F+Q
Sbjct: 49 SSLPTFPAKKFGLKLQLTLTSSPTNSSSPISSSSPTNGGFKQ 90
>U50312-1|AAA92318.1| 285|Caenorhabditis elegans Hypothetical
protein B0222.1 protein.
Length = 285
Score = 30.3 bits (65), Expect = 1.4
Identities = 28/85 (32%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Frame = -2
Query: 524 TNLFRTALFLHAQLRQFLDRGCSL*SAGETSTISLAPWWMVASSRQTVPTRKDGSSLS*P 345
+ LF ++L L + L Q LD S G S+ + + +SS + +R GSS S
Sbjct: 2 SRLFWSSLLLFSLLSQHLDAKGSF-GGGRGSSGARSS----SSSFSSSSSRSSGSSFSSS 56
Query: 344 TSRDTTSGTEP-RSDSSSTNGSFRQ 273
+S TSGT RS ++ + +FRQ
Sbjct: 57 SSSRPTSGTSSYRSGNTQYSSNFRQ 81
>U40060-9|AAA81147.1| 111|Caenorhabditis elegans Hypothetical
protein F38B6.1 protein.
Length = 111
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -2
Query: 695 RILLASPLVQLKVCVSPSFRCPVTQXSRLWQILTYCTTAP 576
+I A+P+ Q++ +PS P+ + +LW +L + TT+P
Sbjct: 30 KIFNAAPITQIE---NPSRPGPIKEYRKLWIVLIFKTTSP 66
>AL021066-1|CAH10789.1| 181|Caenorhabditis elegans Hypothetical
protein H31B20.1 protein.
Length = 181
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -2
Query: 410 WMVASSRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTP 267
W + T PTR + S P R ++SG + S S+ + FR+ P
Sbjct: 82 WKTSQQTDTEPTRPEILEESLPKVRKSSSGLKQSSVSARNSLDFRERP 129
>AC006629-8|ABC48258.1| 312|Caenorhabditis elegans Hypothetical
protein F12E12.9 protein.
Length = 312
Score = 28.7 bits (61), Expect = 4.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = -1
Query: 300 FVHEWFISSNPAIKRAFVRFMD 235
F+ W I SNP ++R ++ F D
Sbjct: 235 FLKSWMIGSNPRLERVYIYFQD 256
>Z68108-13|CAF31493.1| 2048|Caenorhabditis elegans Hypothetical
protein T05A10.1f protein.
Length = 2048
Score = 28.3 bits (60), Expect = 5.7
Identities = 18/43 (41%), Positives = 26/43 (60%)
Frame = -2
Query: 386 TVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSN 258
+ P+ +D S L+ TSR +S T P SSSTN S+R+ S+
Sbjct: 1815 STPSHRDLSFLAHTTSRSESSITSP-IVSSSTNFSYRKRSESS 1856
>Z48582-1|CAA88465.1| 490|Caenorhabditis elegans Hypothetical
protein F27E5.3 protein.
Length = 490
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = -2
Query: 422 LAPWWMVASSRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPS 261
L+P + S TV T + + PT+R TS + +S +PPS
Sbjct: 286 LSPSTVTTSGPSTVDTTGSSGNSTDPTTRSNTSNVPSGTSEASITNPILHSPPS 339
>AC006761-2|AAF60547.1| 402|Caenorhabditis elegans Hypothetical
protein Y41G9A.5 protein.
Length = 402
Score = 28.3 bits (60), Expect = 5.7
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Frame = +1
Query: 286 PFVDEESERGSVPEVV-SLEVGQDKLEPSFL--VGTVWREEATIHHGAREI 429
P + E S PE V S+E G+D+ P+FL +G+ ATI G+ E+
Sbjct: 127 PVILERSTVFVTPETVGSIESGEDRKHPTFLERLGSATLPIATIIPGSEEL 177
>Z77132-5|CAB00863.2| 1423|Caenorhabditis elegans Hypothetical
protein F54D1.6 protein.
Length = 1423
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -1
Query: 261 KRAFVRFMDIINNLNDVFMVNSAEVIDWVKNPVP 160
++AFV ++ + D ++ V DW KNP+P
Sbjct: 438 EKAFVGYIYFVPPTLDPMRLDIGNVYDWFKNPLP 471
>AL021492-1|CAA16377.1| 179|Caenorhabditis elegans Hypothetical
protein Y45F10D.2 protein.
Length = 179
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/70 (28%), Positives = 31/70 (44%), Gaps = 2/70 (2%)
Frame = -2
Query: 476 FLDRGCSL*SAGETSTISLAPWWMVASSRQTVPTRKDGSSLS*--PTSRDTTSGTEPRSD 303
F D + + +++ S P ++V+S T P SS S PT + T P +
Sbjct: 50 FTDVNSQMAQSLKSAINSALPGYLVSSRSSTPPASSASSSASSMTPTGNGAQASTIPMNQ 109
Query: 302 SSSTNGSFRQ 273
SST+ RQ
Sbjct: 110 GSSTSMPVRQ 119
>AF089729-1|AAD04156.1| 458|Caenorhabditis elegans SMG-7 protein.
Length = 458
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 398 SSRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTN 288
S + T+P +D SLS TSR +EP S+S S++
Sbjct: 396 SDQSTIP-EEDQKSLSTDTSRIQNEDSEPESESESSD 431
>AC024204-5|AAF36043.1| 458|Caenorhabditis elegans Suppressor with
morphological effecton genitalia protein 7 protein.
Length = 458
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -2
Query: 398 SSRQTVPTRKDGSSLS*PTSRDTTSGTEPRSDSSSTN 288
S + T+P +D SLS TSR +EP S+S S++
Sbjct: 396 SDQSTIP-EEDQKSLSTDTSRIQNEDSEPESESESSD 431
>AJ276590-1|CAB91651.1| 679|Caenorhabditis elegans LET-413 protein
protein.
Length = 679
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 335 LSKLVRINLNHPSSSVRSGVKKQPSTMEQGKLLRSLQL 448
L++L+ +NLN R+ + K P TM+ KLL +L L
Sbjct: 81 LTQLIELNLN------RNSIAKLPDTMQNCKLLTTLNL 112
>AF068716-10|AAC17752.2| 679|Caenorhabditis elegans Lethal protein
413, isoform a protein.
Length = 679
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 335 LSKLVRINLNHPSSSVRSGVKKQPSTMEQGKLLRSLQL 448
L++L+ +NLN R+ + K P TM+ KLL +L L
Sbjct: 81 LTQLIELNLN------RNSIAKLPDTMQNCKLLTTLNL 112
>AF068716-9|AAT81195.1| 699|Caenorhabditis elegans Lethal protein
413, isoform b protein.
Length = 699
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +2
Query: 335 LSKLVRINLNHPSSSVRSGVKKQPSTMEQGKLLRSLQL 448
L++L+ +NLN R+ + K P TM+ KLL +L L
Sbjct: 81 LTQLIELNLN------RNSIAKLPDTMQNCKLLTTLNL 112
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,848,620
Number of Sequences: 27780
Number of extensions: 413584
Number of successful extensions: 1322
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1315
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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