Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m17r
         (708 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31460.1 68414.m03852 expressed protein                             31   0.57 
At5g01280.1 68418.m00037 expressed protein                             29   3.0  
At2g34510.1 68415.m04239 expressed protein contains Pfam profile...    28   7.0  
At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase fami...    28   7.0  
At5g17930.1 68418.m02102 MA3 domain-containing protein low simil...    27   9.2  
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea...    27   9.2  
At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM TIGR01...    27   9.2  

>At1g31460.1 68414.m03852 expressed protein
          Length = 301

 Score = 31.5 bits (68), Expect = 0.57
 Identities = 16/36 (44%), Positives = 21/36 (58%)
 Frame = +1

Query: 286 PFVDEESERGSVPEVVSLEVGQDKLEPSFLVGTVWR 393
           P  D E E+ S P+  S     DKL PS L+G++WR
Sbjct: 183 PSTDSEPEKKSKPK--SKSSWFDKLSPSKLIGSIWR 216


>At5g01280.1 68418.m00037 expressed protein
          Length = 460

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 4/53 (7%)
 Frame = -2

Query: 401 ASSRQTVPTRKDGSSL---S*PTSRDTTSGTEPRSDSSSTNGSFRQ-TPPSNA 255
           ++SR   PTRK  +     S PTSR T++ T     SSST  S R  + PS++
Sbjct: 93  STSRPPTPTRKSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSS 145


>At2g34510.1 68415.m04239 expressed protein contains Pfam profile
           PF04862: Protein of unknown function, DUF642
          Length = 401

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = -2

Query: 356 LS*PTSRDTTSGTEPRSDSSSTNGSFRQTPPSNALLSD 243
           LS   + D+   T P  D    NG F +TPPSN    D
Sbjct: 21  LSIVAAADSAGKTSPVEDGLVVNGDF-ETPPSNGFPDD 57


>At2g28880.1 68415.m03510 para-aminobenzoate (PABA) synthase family
           protein similar to PABA synthase from Streptomyces
           griseus [SP|P32483], Streptomyces pristinaespiralis
           [gi:1575336]; contains Pfam profiles  PF00425:
           chorismate binding enzyme, PF00117: glutamine
           amidotransferase class-I, PF04715: Anthranilate synthase
           component I, N terminal region
          Length = 919

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = -1

Query: 363 FKFILTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRF 241
           ++  LT   R  +GN  P G ++H      NPA   AF+ F
Sbjct: 664 YELCLTTQNRRKIGNADPLGLYLH--LRERNPAPYAAFLNF 702


>At5g17930.1 68418.m02102 MA3 domain-containing protein low
           similarity to SP|Q9P6R9 Cell cycle control protein cwf22
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF02847: MA3 domain
          Length = 707

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 15/54 (27%), Positives = 22/54 (40%)
 Frame = -1

Query: 366 WFKFILTNFERHYLGNRAPFGFFVHEWFISSNPAIKRAFVRFMDIINNLNDVFM 205
           W  F        Y   R    FFV E+ + +N AI   F +  + +NN   + M
Sbjct: 654 WNLFTRIALNPEYEALRDGIKFFVKEYVVKNNKAIYGKFRKAKEALNNAEGLLM 707


>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
            family protein contains 5 WD-40 repeats (PF00400); AND-1
            protein - Homo sapiens, EMBL:AJ006266
          Length = 951

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 23/95 (24%), Positives = 42/95 (44%)
 Frame = +2

Query: 179  QSMTSAEFTMKTSFKLLMISMNLTKARLMAGFDEMNHSWTKNPNGALFPR*CLSKLVRIN 358
            Q+  + E  MK+S   L     L K+++  G  ++    TK           + ++ ++N
Sbjct: 860  QTSENTEAVMKSSATKLSAPTLLKKSKVSEGL-KLGKEQTKKDKSDDAK---IKEIKKLN 915

Query: 359  LNHPSSSVRSGVKKQPSTMEQGKLLRSLQLIIGST 463
            L +P ++V    K Q   + QG+  RS    + ST
Sbjct: 916  LKNPVNNVNKEDKGQEKEVNQGEARRSSNPFLKST 950


>At1g20970.1 68414.m02625 adhesin-related contains TIGRFAM
           TIGR01612: reticulocyte binding protein; contains
           TIGRFAM TIGR00864: polycystin cation channel protein;
           similar to fimbriae-associated protein Fap1
           [Streptococcus parasanguinis] (GI:3929312)
          Length = 1498

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 283 EPFVDEESERGSVPEVVSLEVGQD-KLEPSFLVGTVWREEATIHHGAREIVEVSPADHRE 459
           E  V E S   +  EV +  V  + K     L   V     TIH GA++ V+  PA+++E
Sbjct: 688 ESDVKERSSINTDEEVATASVASEIKTCAQDLESKVVTSTDTIHTGAKDCVDSQPAENKE 747


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,068,506
Number of Sequences: 28952
Number of extensions: 393026
Number of successful extensions: 1069
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1022
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1526202912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)