Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m17f
         (620 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces po...    31   0.18 
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    27   2.9  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    26   3.8  
SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr 3||...    25   6.7  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   8.8  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    25   8.8  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    25   8.8  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    25   8.8  

>SPAPB24D3.09c |pdr1||ABC transporter Pdr1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1396

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +1

Query: 220  VINIETYREVLY-GRSNSNRCPAGATFYVSHEYTNYQLV--NELYNRGFEIALHSISHRT 390
            V N E Y    Y    N++    G  ++ +H++ N+ ++     +N G  IAL+ I H+T
Sbjct: 1325 VYNPEAYSSCQYCPYKNADELMVGFGYHYNHKWRNFCIMIGYTAFNLGAAIALYYIIHKT 1384

Query: 391  P 393
            P
Sbjct: 1385 P 1385


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 4/53 (7%)
 Frame = +2

Query: 326 SWSTNSTIEASRLLYIRSVTEPPRRSGLMPRIKT----WSRKLEIRKDKWRIL 472
           SW+  S +E       RS+TE   + GL PR  T    W   + + + K ++L
Sbjct: 421 SWAMQSAVEGKWSNNGRSITESWLKEGLRPRCITRDLKWGTPVPLEEFKGKVL 473


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = -1

Query: 248 TSRYVSMLMTLIPSSNVTVTNCGVSLARNPPGILVDE-HLQSGSLQASSSHGVANGSS 78
           T R  SML   I SSN   +N G S      G  ++E  +Q G LQ        +GS+
Sbjct: 111 TRRIQSMLQDFIKSSNGGFSNYGSSANGKSSGNALEEVEIQKGLLQIIDGLVFLHGSA 168


>SPCC737.05 |||peroxin Pex28/29|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 264

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +2

Query: 53  SSWLRLLALSCHWLHHVTKRLVSSRTADARPLIFLEDY 166
           SS+ +LL    ++ HH+T   +SS    +  LIFL  Y
Sbjct: 96  SSYDQLLYFRQNYYHHITPSAISSGLLVSLVLIFLLAY 133


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +2

Query: 290 LPSTSATSTQTISWSTNSTIEASRLLYIRSVTEPPRRSGLMPRIKTWSRK 439
           L S SA S+ +    T++T  +SRL   R    PP  S   P + + + K
Sbjct: 227 LLSVSALSSSSHLQPTSATSSSSRLYPSRPAPTPPASSSSSPLLSSQTVK 276


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/48 (22%), Positives = 26/48 (54%)
 Frame = -1

Query: 176 SLARNPPGILVDEHLQSGSLQASSSHGVANGSSVPRAAATRSKEHKTD 33
           S ++ P     ++   + S+   +S   ANG+S  + ++ R+ +++TD
Sbjct: 424 STSQEPSSNANNQSSPTSSINGKASSESANGTSYSKGSSRRNSKNETD 471


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -3

Query: 516 EGDTHTFNCTSGDASKMRHLSFLISNFLDQ 427
           E D    NC   D + + HL+ L S+FL +
Sbjct: 188 ESDELRANCPFTDCNSINHLTCLASSFLTE 217


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 290 LPSTSATSTQTISWSTNSTIEASRLLYIRSVTEPPRRS 403
           LPS + T+T   S ST ++  +     I S+  PP  S
Sbjct: 39  LPSANVTTTSFSSASTETSTHSVTSTNITSIVPPPSTS 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,818
Number of Sequences: 5004
Number of extensions: 55707
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)