Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m17f
(620 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08) 159 1e-39
SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.) 138 3e-33
SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.) 132 3e-31
SB_4469| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.00
SB_13326| Best HMM Match : RVT_1 (HMM E-Value=1.3) 31 1.00
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05) 29 3.0
SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7) 29 4.0
SB_56758| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_33234| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=3.9) 29 4.0
SB_9915| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.3
SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14) 28 7.0
SB_47758| Best HMM Match : TFIIA (HMM E-Value=2.7e-18) 28 7.0
>SB_58590| Best HMM Match : Polysacc_deac_1 (HMM E-Value=2.6e-08)
Length = 893
Score = 159 bits (387), Expect = 1e-39
Identities = 73/176 (41%), Positives = 100/176 (56%)
Frame = +1
Query: 91 ATPCDEEACKLPDCRCSSTNIPGGLRARDTPQFVTVTFDDGINVINIETYREVLYGRSNS 270
A C + CKLP+C CS +PGGL ++ PQ + +TFDD IN Y+++ G+ N
Sbjct: 566 AERCHPDVCKLPNCFCSGALVPGGLNPKEIPQMIMLTFDDAINGQVYPVYQKIFNGKKNP 625
Query: 271 NRCPAGATFYVSHEYTNYQLVNELYNRGFEIALHSISHRTPQAFWADATYQNLVQEIGDQ 450
N C ATF+VSHEYT YQL+ LY+ EIA HSISHR P +W +AT + E
Sbjct: 626 NGCDIRATFFVSHEYTQYQLLQALYHERHEIADHSISHRLPIPWWKNATVKQWTDEAAGM 685
Query: 451 KRQMAHFASIPASAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLW 618
+ + F + A +KG R PFLQ+ G+ F+ + D Y+ + PT NP LW
Sbjct: 686 REILRKFGGVNAEDVKGFRAPFLQIGGDNEFKALHDNKFTYETSMPTQQ-NNPPLW 740
>SB_4485| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1769
Score = 138 bits (334), Expect = 3e-33
Identities = 65/157 (41%), Positives = 93/157 (59%)
Frame = +1
Query: 148 NIPGGLRARDTPQFVTVTFDDGINVINIETYREVLYGRSNSNRCPAGATFYVSHEYTNYQ 327
++P GL + PQ + +TFDD IN+ Y+ +L N N C ATF+VSHEYT+YQ
Sbjct: 1555 SVPNGLDPKQIPQMIMLTFDDAINMQVFPFYQTLLNDTKNPNGCNVRATFFVSHEYTDYQ 1614
Query: 328 LVNELYNRGFEIALHSISHRTPQAFWADATYQNLVQEIGDQKRQMAHFASIPASAIKGVR 507
L+ LY+ EIA H+ISHRTP +W ATYQ+ EI + + F + ++G R
Sbjct: 1615 LLGTLYHERHEIADHTISHRTPIEWWKKATYQDWGSEIRGMRDILKEFGGVNEKDVRGFR 1674
Query: 508 IPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLW 618
PFLQ+ G+ F+V+ D ++D + PT T+P LW
Sbjct: 1675 APFLQIGGDNQFKVLHDHSFMFDSSMPTWR-TDPPLW 1710
>SB_641| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 530
Score = 132 bits (318), Expect = 3e-31
Identities = 56/113 (49%), Positives = 76/113 (67%), Gaps = 1/113 (0%)
Frame = +1
Query: 88 LATPCDEEACKLPDCRCSST-NIPGGLRARDTPQFVTVTFDDGINVINIETYREVLYGRS 264
+A CD E C+ P+CRCS PGGL TPQ + +TFDD I VIN E Y++ + G +
Sbjct: 26 VAEKCDLEKCQPPNCRCSDDFQPPGGLSPALTPQIIMITFDDDITVINYEQYKDAVKGFT 85
Query: 265 NSNRCPAGATFYVSHEYTNYQLVNELYNRGFEIALHSISHRTPQAFWADATYQ 423
N N CP ATF++SH YTNY L +L++ G E+A H+++HRTP +W DATY+
Sbjct: 86 NPNGCPITATFFISHNYTNYYLAEKLHSEGHELADHTVTHRTPTTYWEDATYE 138
Score = 36.7 bits (81), Expect = 0.015
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 478 IPASAIKGVRIPFLQMSGNTSFQVMADFDLLYDCTWPTTALTNPGLW 618
+P+S IKG R PFL+++ + + + + YD +WPT NP ++
Sbjct: 207 LPSSTIKGFRAPFLEITEH-QYPGLYTNNFTYDLSWPTGRYYNPPMY 252
>SB_4469| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 189
Score = 30.7 bits (66), Expect = 1.00
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 29 GCRFCALCSSWLRLLALSCHWLHHVTKRLVSSRTADAR 142
GCR CA S+ + + +L C W R +S+ T D R
Sbjct: 80 GCRACARFSTTIFISSLVCDWPSKTRLRTISTFTQDRR 117
>SB_13326| Best HMM Match : RVT_1 (HMM E-Value=1.3)
Length = 356
Score = 30.7 bits (66), Expect = 1.00
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -3
Query: 375 RM*SNLEASIVEFVDQLIVCVLVADVEGSSGWA--AVRVAAAVKDLTVCLNVNDIDTVIE 202
R+ +L A + +DQL ++A V+G + W V V KDL +CL+ D++ I
Sbjct: 72 RVPMSLHARLKGKLDQLERDGIIAKVDGPTDWVHNIVVVENKNKDLQMCLDPKDLNQAIR 131
Query: 201 R 199
R
Sbjct: 132 R 132
>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
Length = 822
Score = 29.1 bits (62), Expect = 3.0
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 169 ARDTPQF-VTVTFDDGINVINIETYREVLYGRSNSNRCPAGATFYVSHEYTNYQLVNELY 345
ARD + V D + ++N+E + G NS++ V+ + NY+++N L
Sbjct: 89 ARDNDSVSLGVALDHYMELLNMEGLNDNNPGDPNSHKPKNFLPLVVAAQLGNYEVLNMLV 148
Query: 346 NRGFEI 363
++GF++
Sbjct: 149 SKGFQL 154
>SB_59377| Best HMM Match : Exo_endo_phos (HMM E-Value=1.7)
Length = 839
Score = 28.7 bits (61), Expect = 4.0
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = -1
Query: 206 SNVTVTNCG--VSLARNPPGILVDEHLQSGSLQASSSHGVANGSSVPRAAAT 57
+NVT +CG +SLA + + HL G L + G +N S + AT
Sbjct: 148 NNVTHVDCGSIISLAPQDSRLHLSHHLPQGDLIFKLNPGPSNNGSAKKDCAT 199
>SB_56758| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 50 CSSWLRLLALSCHWLHH 100
C+S LRLL LSC W H+
Sbjct: 115 CASSLRLLCLSCGWKHN 131
>SB_33234| Best HMM Match : DNA_RNApol_7kD (HMM E-Value=3.9)
Length = 410
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +2
Query: 50 CSSWLRLLALSCHWLHH 100
C+S LRLL LSC W H+
Sbjct: 33 CASSLRLLCLSCGWKHN 49
>SB_9915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 304
Score = 28.3 bits (60), Expect = 5.3
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 209 TVSMSLTLRHTVRSFXXXXXXXXXQPELPSTSATSTQTISWSTNSTIEASRLLY 370
TVS S+ RH SF ++ + + T+T+T + TN T E + Y
Sbjct: 201 TVSWSIYRRHCGISFYVPAYNKTVYAKIGTLATTATRTTATKTNETFEEPDVKY 254
>SB_12959| Best HMM Match : Peptidase_M16_C (HMM E-Value=1e-14)
Length = 593
Score = 27.9 bits (59), Expect = 7.0
Identities = 15/37 (40%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +1
Query: 145 TNIP--GGLRARDTPQFVTVTFDDGINVINIETYREV 249
T+IP G +R R T Q T+ D+G+ V ++ETY +
Sbjct: 16 TDIPAKGSVRERQTVQVTTL--DNGLKVASLETYSPI 50
>SB_47758| Best HMM Match : TFIIA (HMM E-Value=2.7e-18)
Length = 296
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 82 LPLATPCDEEACKLPDCRCSSTNIPGGLRARDTP 183
+P A + +P +S +IPGGL R TP
Sbjct: 88 MPQAISRQPQQVTIPSTHVASVSIPGGLAQRQTP 121
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,202,091
Number of Sequences: 59808
Number of extensions: 472658
Number of successful extensions: 2043
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2038
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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