Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m17f
         (620 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal ...    23   5.9  
DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domai...    23   7.8  
AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.           23   7.8  

>CR954257-6|CAJ14157.1|  375|Anopheles gambiae RrnaAD, ribosomal RNA
           adenine dimethylaseprotein.
          Length = 375

 Score = 23.4 bits (48), Expect = 5.9
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = -1

Query: 248 TSRYVSMLMTLIPSSNVTVTNCGVSLARN 162
           T  YVS    +IPS    + +CG  L  N
Sbjct: 236 TQHYVSRRNRIIPSLEHWIPHCGARLILN 264


>DQ370045-1|ABD18606.1|  285|Anopheles gambiae putative TIL domain
           protein protein.
          Length = 285

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = +1

Query: 97  PCDEEACKLPDCRCSSTNIPG 159
           PC ++AC     +C ++ +PG
Sbjct: 37  PCPQKACISEAVKCQTSCLPG 57


>AY873992-1|AAW71999.1|  259|Anopheles gambiae nanos protein.
          Length = 259

 Score = 23.0 bits (47), Expect = 7.8
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = -2

Query: 190 QTVECLWLVILQEY*WTSICSPGAYKPLRH 101
           +T E LW +IL  Y W    +  A + L++
Sbjct: 12  KTTEALWKLILAPYGWNEQMNEAAREFLKN 41


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 695,353
Number of Sequences: 2352
Number of extensions: 14556
Number of successful extensions: 30
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 60214320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)