Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m17f
(620 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g27600.1 68418.m03305 AMP-binding protein, putative similar t... 30 1.1
At3g52070.2 68416.m05714 expressed protein 29 3.3
At3g52070.1 68416.m05713 expressed protein 29 3.3
At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat fam... 29 3.3
At1g09440.1 68414.m01056 protein kinase family protein contains ... 29 3.3
At2g42960.1 68415.m05328 protein kinase family protein contains ... 28 4.3
At1g47765.1 68414.m05312 F-box family protein contains F-box dom... 28 4.3
At3g59110.1 68416.m06590 protein kinase family protein contains ... 28 5.7
At2g22720.3 68415.m02692 expressed protein 28 5.7
At2g22720.2 68415.m02691 expressed protein 28 5.7
At2g22720.1 68415.m02693 expressed protein 28 5.7
At5g66350.1 68418.m08365 zinc finger protein, putative (SHI) sim... 27 7.6
At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containi... 27 7.6
At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family... 27 7.6
At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family... 27 7.6
At1g56720.2 68414.m06524 protein kinase family protein contains ... 27 7.6
At1g56720.1 68414.m06523 protein kinase family protein contains ... 27 7.6
>At5g27600.1 68418.m03305 AMP-binding protein, putative similar to
AMP-binding protein (MF39P) gi:1617274 from Brassica
napus, long-chain-fatty-acid--CoA ligase - Brassica
napus, EMBL:Z72152; contains Pfam AMP-binding enzyme
domain PF00501
Length = 700
Score = 30.3 bits (65), Expect = 1.1
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
Frame = +1
Query: 349 RGFEIALHS-----ISHRTPQAFWADATYQNLVQEIGDQKRQMAHFAS 477
R FEIA +S I+ RTP AFW + + +++G + R M AS
Sbjct: 379 RLFEIAYNSKKQAIINGRTPSAFWDKLVFNKIKEKLGGRVRFMGSGAS 426
>At3g52070.2 68416.m05714 expressed protein
Length = 113
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 417 RGISPERLGGSVTDRM*SNLEASIVEFVDQLIVC 316
+ + PE+ G V D M +L ++ ++ QL+VC
Sbjct: 66 KNLKPEKKKGDVKDLMLMSLSFAVYVYISQLLVC 99
>At3g52070.1 68416.m05713 expressed protein
Length = 114
Score = 28.7 bits (61), Expect = 3.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = -3
Query: 417 RGISPERLGGSVTDRM*SNLEASIVEFVDQLIVC 316
+ + PE+ G V D M +L ++ ++ QL+VC
Sbjct: 66 KNLKPEKKKGDVKDLMLMSLSFAVYVYISQLLVC 99
>At3g52030.1 68416.m05707 F-box family protein / WD-40 repeat family
protein
Length = 454
Score = 28.7 bits (61), Expect = 3.3
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 7/47 (14%)
Frame = +2
Query: 47 LCSSW------LRLLALSCHWLHHVTKRLVSSRTADARPL-IFLEDY 166
+C+SW L+LL SC +HH+ SS T+ RP I +ED+
Sbjct: 49 VCNSWNAVIKRLKLLQASCRKMHHLGSDSPSSSTSLDRPAEIDVEDF 95
>At1g09440.1 68414.m01056 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 466
Score = 28.7 bits (61), Expect = 3.3
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Frame = +1
Query: 256 GRSNSNRCPAGATFYVSHEYTNYQLVNE---LYNRGFEIALHSISHRTPQAFWADATYQN 426
G+S+ G YV+ EY N L+NE +Y+ G + L +I+ R P + A N
Sbjct: 311 GKSHVTTRVMGTFGYVAPEYANTGLLNEKSDVYSFGV-LVLEAITGRDPVDYARPANEVN 369
Query: 427 LVQ 435
LV+
Sbjct: 370 LVE 372
>At2g42960.1 68415.m05328 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 494
Score = 28.3 bits (60), Expect = 4.3
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 256 GRSNSNRCPAGATFYVSHEYTNYQLVNE---LYNRGFEIALHSISHRTPQAFWADATYQN 426
G S+ G YV+ EY N L+NE +Y+ G + L +I+ R P + A N
Sbjct: 337 GESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGV-LLLEAITGRDPVDYGRPANEVN 395
Query: 427 LVQ 435
LV+
Sbjct: 396 LVE 398
>At1g47765.1 68414.m05312 F-box family protein contains F-box domain
Pfam:PF00646
Length = 385
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/56 (25%), Positives = 26/56 (46%)
Frame = +1
Query: 166 RARDTPQFVTVTFDDGINVINIETYREVLYGRSNSNRCPAGATFYVSHEYTNYQLV 333
R+ D Q +T+ + I ++TY + +S RC G +Y++ Y + V
Sbjct: 177 RSSDVCQVLTLGPAQEFSWITVKTYHKHCSDYQSSGRCIKGVVYYIAQVYHTHAWV 232
>At3g59110.1 68416.m06590 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 512
Score = 27.9 bits (59), Expect = 5.7
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = +1
Query: 256 GRSNSNRCPAGATFYVSHEYTNYQLVNE---LYNRGFEIALHSISHRTPQAFWADATYQN 426
G S+ G YV+ EY N L+NE +Y+ G + L +I+ R P + A N
Sbjct: 344 GESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGV-LLLETITGRDPVDYERPANEVN 402
Query: 427 LVQ 435
LV+
Sbjct: 403 LVE 405
>At2g22720.3 68415.m02692 expressed protein
Length = 569
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 273 PLPSRSYLLRQPRVHKLSAGQRTLQ*RLRDCSTFDQSQNP 392
PLPS+S L R+P +SAG+ +LQ R S+ S +P
Sbjct: 398 PLPSKSSLERKP---SISAGKSSLQSPQRPSSSRPMSSDP 434
>At2g22720.2 68415.m02691 expressed protein
Length = 672
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 273 PLPSRSYLLRQPRVHKLSAGQRTLQ*RLRDCSTFDQSQNP 392
PLPS+S L R+P +SAG+ +LQ R S+ S +P
Sbjct: 501 PLPSKSSLERKP---SISAGKSSLQSPQRPSSSRPMSSDP 537
>At2g22720.1 68415.m02693 expressed protein
Length = 340
Score = 27.9 bits (59), Expect = 5.7
Identities = 17/40 (42%), Positives = 24/40 (60%)
Frame = +3
Query: 273 PLPSRSYLLRQPRVHKLSAGQRTLQ*RLRDCSTFDQSQNP 392
PLPS+S L R+P +SAG+ +LQ R S+ S +P
Sbjct: 169 PLPSKSSLERKP---SISAGKSSLQSPQRPSSSRPMSSDP 205
>At5g66350.1 68418.m08365 zinc finger protein, putative (SHI)
similar to lateral root primordium 1 (LRP1) [Arabidopsis
thaliana] GI:882341; contains Pfam profile PF05142:
Domain of unknown function (DUF702); identical to cDNA
putative zinc finger protein SHI (SHI) GI:4929802
Length = 331
Score = 27.5 bits (58), Expect = 7.6
Identities = 22/81 (27%), Positives = 33/81 (40%)
Frame = -3
Query: 429 QVLIRGISPERLGGSVTDRM*SNLEASIVEFVDQLIVCVLVADVEGSSGWAAVRVAAAVK 250
Q L G P++LGGSV R + A I + +E + V +A +
Sbjct: 166 QQLSTGQQPQQLGGSVPKRQRERIPARSTSMAYTRIPSNNTSGLEVGNFPPEVSSSAVFR 225
Query: 249 DLTVCLNVNDIDTVIERYGYK 187
C+ V+ +D E Y YK
Sbjct: 226 ----CVRVSSVDDEEEEYAYK 242
>At4g19220.1 68417.m02835 pentatricopeptide (PPR) repeat-containing
protein contains INTERPRO:IPR002885 PPR repeats
Length = 932
Score = 27.5 bits (58), Expect = 7.6
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Frame = -3
Query: 534 VTGHLKEGDTHTFNCTSGDASKMRHLSFLISNFLDQVLIRGISPE---RLGGSVTDRM*S 364
+TG +E DT TF+C S + L+ L + V+ G SPE +G S+
Sbjct: 280 MTGSGQEADTVTFSCVISACSSIEELT-LGESLHGLVIKSGYSPEAHVSVGNSIISMYSK 338
Query: 363 NLEASIVEFVDQLIVC 316
+ E V + +VC
Sbjct: 339 CGDTEAAETVFEELVC 354
>At1g75230.2 68414.m08739 HhH-GPD base excision DNA repair family
protein contains Pfam domain PF00730: HhH-GPD
superfamily base excision DNA repair protein
Length = 394
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 284 PELPSTSATSTQTISWS--TNSTIEASRLLYIRSVTEPPRRSGLMPR 418
PE + S+ +S S +++TIEA ++ + +V+ PP + L PR
Sbjct: 32 PETNDDDSASSAGVSGSIVSSTTIEAPQVTELGNVSSPPTKIPLRPR 78
>At1g75230.1 68414.m08740 HhH-GPD base excision DNA repair family
protein contains Pfam domain PF00730: HhH-GPD
superfamily base excision DNA repair protein
Length = 391
Score = 27.5 bits (58), Expect = 7.6
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 284 PELPSTSATSTQTISWS--TNSTIEASRLLYIRSVTEPPRRSGLMPR 418
PE + S+ +S S +++TIEA ++ + +V+ PP + L PR
Sbjct: 32 PETNDDDSASSAGVSGSIVSSTTIEAPQVTELGNVSSPPTKIPLRPR 78
>At1g56720.2 68414.m06524 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 492
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 256 GRSNSNRCPAGATFYVSHEYTNYQLVNE---LYNRGFEIALHSISHRTPQAFWADATYQN 426
G+S+ G YV+ EY N L+NE +Y+ G + L +I+ R P + A N
Sbjct: 333 GKSHVTTRVMGTFGYVAPEYANSGLLNEKSDVYSFGV-VLLEAITGRDPVDYGRPAHEVN 391
Query: 427 LV 432
LV
Sbjct: 392 LV 393
>At1g56720.1 68414.m06523 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 492
Score = 27.5 bits (58), Expect = 7.6
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 256 GRSNSNRCPAGATFYVSHEYTNYQLVNE---LYNRGFEIALHSISHRTPQAFWADATYQN 426
G+S+ G YV+ EY N L+NE +Y+ G + L +I+ R P + A N
Sbjct: 333 GKSHVTTRVMGTFGYVAPEYANSGLLNEKSDVYSFGV-VLLEAITGRDPVDYGRPAHEVN 391
Query: 427 LV 432
LV
Sbjct: 392 LV 393
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,486,423
Number of Sequences: 28952
Number of extensions: 306610
Number of successful extensions: 944
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 944
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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