Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m16r
         (651 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     24   0.94 
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    24   0.94 
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           24   0.94 
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    24   0.94 
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   6.7  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.7  

>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 439 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 350
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 439 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 350
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 439 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 350
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -3

Query: 439 NDYVQPIRLQSSYHKDYNYDGYRLTATGWG 350
           N ++Q  +LQ  YH   NY+   + + G+G
Sbjct: 52  NHHIQQQQLQYGYHNHQNYNS-NVLSNGYG 80


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 289 TNAFCSEIFVINNIVQDSTICASGYNVTSQS 197
           TNAF S+   IN IVQ+      G  V  +S
Sbjct: 878 TNAFGSDDTSINMIVQEVPEVPYGLKVLDKS 908


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -3

Query: 343 WTNGTAPENMNWVFLRGVTNAFCS 272
           W N TA      VF+ G+ N  C+
Sbjct: 525 WANCTASTRCWEVFMDGICNEDCN 548


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,478
Number of Sequences: 336
Number of extensions: 3107
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)