Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m16f
         (611 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like p...    55   5e-08
U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like pr...    34   0.092
AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical ...    31   0.86 
AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical ...    31   0.86 
Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like p...    29   2.0  
U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical p...    29   2.6  
Z99942-6|CAI79199.1|  119|Caenorhabditis elegans Hypothetical pr...    28   4.6  
Z35663-9|CAA84730.1|  219|Caenorhabditis elegans Hypothetical pr...    28   6.0  
Z35598-7|CAA84650.2|  325|Caenorhabditis elegans Hypothetical pr...    28   6.0  
AC006656-3|AAF39882.1|  549|Caenorhabditis elegans Hypothetical ...    28   6.0  
U41270-2|AAA82440.1|  298|Caenorhabditis elegans Cell-death-rela...    27   8.0  
AY303578-1|AAP57300.1|  298|Caenorhabditis elegans cell death-re...    27   8.0  
AL031627-16|CAA20968.1|  262|Caenorhabditis elegans Hypothetical...    27   8.0  

>U58751-11|AAB00662.1|  265|Caenorhabditis elegans Trypsin-like
           protease protein 2 protein.
          Length = 265

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 8/144 (5%)
 Frame = +3

Query: 114 ARIVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHC-----TATRVTI 278
           AR+V G+E   G FP+  +LR  N     + CGA+I+     +TAAHC       +   +
Sbjct: 25  ARVVGGFETVPGAFPWTAALR--NKATKAHHCGASILDKTHLITAAHCFEEDERVSSYEV 82

Query: 279 VIRAGTVNMT-RPAVVFETTDYLNHPLYDESIQQIVQPHDIGLIKFG-RSLVFNDYVQPI 452
           V+     N T     +F       +PLY +     +  HDI +++     + FN+Y QPI
Sbjct: 83  VVGDWDNNQTDGNEQIFYLQRIHFYPLYKD-----IFSHDIAILEIPYPGIEFNEYAQPI 137

Query: 453 RLQSSYHKDYNY-DGYRLTATGWG 521
            L S   KD+ Y  G +   +GWG
Sbjct: 138 CLPS---KDFVYTPGRQCVVSGWG 158


>U70848-2|AAB09110.4|  313|Caenorhabditis elegans Trypsin-like
           protease protein 3 protein.
          Length = 313

 Score = 33.9 bits (74), Expect = 0.092
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +3

Query: 117 RIVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHCT---ATRVTIVIR 287
           RI+ G   ++G   +   L      G    CGAT+I   W +TAAHC     TR  + +R
Sbjct: 37  RIIGGNSIDDGA-NWMAKLVSYGDNGQGILCGATVIDDFWLVTAAHCALQLQTRSFVYVR 95

Query: 288 AGTVNMTRPAVVFE 329
               N  R   V E
Sbjct: 96  EPKNNRERSFSVKE 109


>AF024491-4|AAZ82855.1|  365|Caenorhabditis elegans Hypothetical
           protein C24A1.2b protein.
          Length = 365

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = -2

Query: 298 TVPALMTMVTRVAVQ*AAVSPQSLWMMVAPQALTAPSGFTMRSDSW*GNCPS-SASHPDT 122
           TVP L T+  ++  Q + + P   W+  A  A TA +  T R       CP+ SASHP+ 
Sbjct: 103 TVP-LPTVTQQIPWQTSTIWP---WIQQAQSASTADA--TQRWLQSALLCPTTSASHPNL 156

Query: 121 ILAPALTFSTKVRAGSADTTATPAIATRSKTAHC 20
           +  P ++   +  A     TA P I++   T  C
Sbjct: 157 LTIPQISVQPQPTAPQTLLTAAPFISSTVFTPTC 190


>AF024491-3|AAB70311.2|  420|Caenorhabditis elegans Hypothetical
           protein C24A1.2a protein.
          Length = 420

 Score = 30.7 bits (66), Expect = 0.86
 Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 1/94 (1%)
 Frame = -2

Query: 298 TVPALMTMVTRVAVQ*AAVSPQSLWMMVAPQALTAPSGFTMRSDSW*GNCPS-SASHPDT 122
           TVP L T+  ++  Q + + P   W+  A  A TA +  T R       CP+ SASHP+ 
Sbjct: 158 TVP-LPTVTQQIPWQTSTIWP---WIQQAQSASTADA--TQRWLQSALLCPTTSASHPNL 211

Query: 121 ILAPALTFSTKVRAGSADTTATPAIATRSKTAHC 20
           +  P ++   +  A     TA P I++   T  C
Sbjct: 212 LTIPQISVQPQPTAPQTLLTAAPFISSTVFTPTC 245


>Z78013-9|CAB01420.2|  297|Caenorhabditis elegans Hypothetical
           protein F15B9.5 protein.
          Length = 297

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
 Frame = +3

Query: 120 IVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHCTAT----RVTIVIR 287
           I++G+ A         S+    P+G  N CG  +I     +T+AHC  +     VT  + 
Sbjct: 17  IINGFSANSFDTLSLASVITRFPDGTTNVCGGVLIAPSIVITSAHCVFSGDDFAVTAKVT 76

Query: 288 AGTVNMTR 311
            G V++ +
Sbjct: 77  LGDVHLNK 84


>U29380-14|AAA68746.2|  293|Caenorhabditis elegans Trypsin-like
           protease protein 1 protein.
          Length = 293

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/49 (30%), Positives = 31/49 (63%)
 Frame = +3

Query: 117 RIVSGWEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTAAHCTA 263
           R++ G E+    +P+  ++++++  G  + CG ++I  ++ LTAAHC A
Sbjct: 57  RLIGGSESSPHSWPW--TVQLLSRLGH-HRCGGSLIDPNFVLTAAHCFA 102


>U41016-10|AAA82321.2| 1656|Caenorhabditis elegans Hypothetical
            protein R11G1.1 protein.
          Length = 1656

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 20/53 (37%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = -2

Query: 157  GNCPSSASHPDTILAPALTFSTKVRAGSADTT--ATPAIATRSKTAHCAISEK 5
            G   SSASHP + L  +   S      +   T  ATPA  T   T H  IS K
Sbjct: 1471 GKNESSASHPSSSLQSSRHSSKFASKATTPRTGDATPASMTSRSTRHSVISRK 1523


>Z99942-6|CAI79199.1|  119|Caenorhabditis elegans Hypothetical
           protein H13N06.7 protein.
          Length = 119

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 320 CFRDDRLFKPPTLRRIDTADCTTSRHRPHQVWTL 421
           CF+  RL    + R  DT++C    + P + WTL
Sbjct: 52  CFKSSRLENVKSCREADTSNCAAPEY-PTRKWTL 84


>Z35663-9|CAA84730.1|  219|Caenorhabditis elegans Hypothetical
           protein T04A8.11 protein.
          Length = 219

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = +3

Query: 132 WEAEEGQFPYQLSLRMVNPEGAVNACGATIIHSDWGLTA 248
           ++AE+G+  Y+ + RM+   G V      +IH  +GL A
Sbjct: 32  YDAEKGEKKYKSTKRMIEARG-VEEVHTELIHEQYGLAA 69


>Z35598-7|CAA84650.2|  325|Caenorhabditis elegans Hypothetical
           protein F10F2.3 protein.
          Length = 325

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 468 YHKDYNYDGYRLTATGWGRTWTNGT 542
           Y  + NY    L AT WG TW +G+
Sbjct: 97  YFLEQNYTEAELYATTWGDTWGSGS 121


>AC006656-3|AAF39882.1|  549|Caenorhabditis elegans Hypothetical
           protein H12I13.3 protein.
          Length = 549

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = +3

Query: 324 FETTDY-LNHPLYDESIQQIV 383
           F+ +DY  NHPLYDES ++++
Sbjct: 450 FDFSDYPKNHPLYDESNKKVI 470


>U41270-2|AAA82440.1|  298|Caenorhabditis elegans Cell-death-related
           nuclease protein4 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 324 FETT-DYLNHPLYDESIQQIVQPHDIGLIKFGRSLVFNDYVQPI 452
           FETT D  N     E IQ  +  +D+   K    + FN YV+P+
Sbjct: 16  FETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPV 59


>AY303578-1|AAP57300.1|  298|Caenorhabditis elegans cell
           death-related nuclease 4 protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/44 (36%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +3

Query: 324 FETT-DYLNHPLYDESIQQIVQPHDIGLIKFGRSLVFNDYVQPI 452
           FETT D  N     E IQ  +  +D+   K    + FN YV+P+
Sbjct: 16  FETTSDAANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPV 59


>AL031627-16|CAA20968.1|  262|Caenorhabditis elegans Hypothetical
           protein Y102A5C.27 protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/50 (30%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
 Frame = +3

Query: 375 QIVQPHDIGLIKFGRSLVFNDYVQPIRL-QSSYHKDYNY---DGYRLTAT 512
           Q VQ +++    FG    F++   P+   +S+YH D+NY   + YR+ ++
Sbjct: 9   QAVQANNLNTDHFGTCGTFDNSRAPVTSHRSTYHNDHNYHYNNNYRIQSS 58


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,446,660
Number of Sequences: 27780
Number of extensions: 273116
Number of successful extensions: 742
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)