Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m15f
         (583 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   1.4  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    22   4.4  
DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory pro...    21   5.8  

>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 160 ARGWAPGSPALEVAKEHLTNIW 225
           A G  PG   L V  E + NIW
Sbjct: 102 AYGKRPGVETLSVGSEFIKNIW 123


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 21.8 bits (44), Expect = 4.4
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 460 TPQQPELYLCQKTVE 416
           TP+ PE Y  QKT++
Sbjct: 103 TPESPEHYYNQKTLQ 117


>DQ855505-1|ABH88192.1|  119|Tribolium castaneum chemosensory
           protein 19 protein.
          Length = 119

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 385 GAIDAEEYSTVQQSFGIDKAQAVEAFKK 468
           GA+  E+Y+T   +  +D+  A E   K
Sbjct: 12  GAVWCEQYTTKYDNINVDEILASERLLK 39


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,915
Number of Sequences: 336
Number of extensions: 2495
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 14517299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)