Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m15f
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 32 0.053
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c... 31 0.16
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 28 1.1
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 27 2.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 27 2.6
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 26 4.6
SPAC3C7.09 |set8||lysine methyltransferase Set8 |Schizosaccharom... 25 8.1
SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1 |Sc... 25 8.1
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 32.3 bits (70), Expect = 0.053
Identities = 21/63 (33%), Positives = 32/63 (50%)
Frame = +1
Query: 238 KAADIDGDGKITQEEWLSLWDKYAQTSTPQEWQDVFCKSLFHVQDSGGDGAIDAEEYSTV 417
K D DG+G IT EE + + + +E D+ ++ D+ GDG I+ EE+S V
Sbjct: 92 KVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREA-----DTDGDGVINYEEFSRV 146
Query: 418 QQS 426
S
Sbjct: 147 ISS 149
Score = 29.9 bits (64), Expect = 0.28
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = +1
Query: 247 DIDGDGKITQEEWLSLWDKYAQTSTPQEWQDVFCKSLFHVQDSGGDGAIDAEEYSTV--Q 420
D D DG IT E + Q+ T E QD + + D+ G+G ID E+ T+ +
Sbjct: 22 DRDQDGNITSNELGVVMRSLGQSPTAAELQD-----MINEVDADGNGTIDFTEFLTMMAR 76
Query: 421 QSFGIDKAQAV-EAFK 465
+ D + V EAFK
Sbjct: 77 KMKDTDNEEEVREAFK 92
>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 618
Score = 30.7 bits (66), Expect = 0.16
Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 4/52 (7%)
Frame = +1
Query: 238 KAADIDGDGKITQEEWLSLW----DKYAQTSTPQEWQDVFCKSLFHVQDSGG 381
KA +D ++ +EE + +KYAQ P+E D+ K+ +QDS G
Sbjct: 426 KAVFLDDIMEVAKEEMHKVMQKNEEKYAQVENPEEVADIVGKTAIRIQDSTG 477
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 27.9 bits (59), Expect = 1.1
Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +1
Query: 196 VAKEHLTNIWNGLQKAADIDGDGKITQEEWLSLW--DKYAQTSTPQEWQDVFCKSL 357
+ L ++ N + + + +G+ T+EE +S+W D + TP E D F + L
Sbjct: 514 ITTSQLESLRNNTEWISSVAENGEKTEEELISIWLGDAKVELITPSEITDGFEEEL 569
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.6 bits (56), Expect = 2.6
Identities = 23/86 (26%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Frame = +1
Query: 88 FFDTDKSGTIEKSDFEKSAEGLAKARGWAPGSPALEVAKEHLTNIWNGLQKAADIDGDGK 267
FF TDK +A+ ++ W P S L + H T +++GL +D +
Sbjct: 763 FFVTDKLRYYSSKILAMTAKTKLTSKNWIPLSGLLFSLRAHDTFMFDGL-----LDRLNE 817
Query: 268 ITQEEWLSLWDK-----YAQTSTPQE 330
++ + +S W K Y+++ST QE
Sbjct: 818 ESRTKLVSSWSKQDAFDYSKSSTHQE 843
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 26.6 bits (56), Expect = 2.6
Identities = 18/75 (24%), Positives = 34/75 (45%)
Frame = +1
Query: 259 DGKITQEEWLSLWDKYAQTSTPQEWQDVFCKSLFHVQDSGGDGAIDAEEYSTVQQSFGID 438
D +T E W+ D+ + T SL HV+ D A+ + E S++Q +F +
Sbjct: 335 DASVT-ENWVHDEDEPDKKITLHSMASAGTSSLDHVKVDADDPAVTSVENSSIQDAFLVF 393
Query: 439 KAQAVEAFKKMAQGK 483
++ A ++ + K
Sbjct: 394 RSMCRLAVRQTSPDK 408
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.6 bits (56), Expect = 2.6
Identities = 17/42 (40%), Positives = 23/42 (54%)
Frame = -2
Query: 477 LSHLFKRLNSLSFIYAKRLLNS*VLFSVDRAIATRVLDVEKA 352
LSH R S +Y + LLNS VL +D +A + V+KA
Sbjct: 107 LSHCANRSIYNSTVYLEYLLNSSVLEVIDSTLALLLHIVQKA 148
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 25.8 bits (54), Expect = 4.6
Identities = 13/52 (25%), Positives = 24/52 (46%)
Frame = +2
Query: 266 K*LKKNGCRYGTNTLRLLHLRNGRMFFARAFSTSKTRVAMARSTLKSTQLFN 421
K +K C++G+ L +GR RAF+ S T + + + + + N
Sbjct: 71 KYFQKGNCKFGSKCALEHVLPDGRKVKTRAFAPSTTAMGSSSQNISAAPMAN 122
>SPAC3C7.09 |set8||lysine methyltransferase Set8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 8.1
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
Frame = +1
Query: 265 KITQEEWLSLWDKYAQT----STPQEWQDVFCKSLFH 363
KI Q+EWLSL +Y+ + T +W V +LFH
Sbjct: 142 KILQQEWLSLNQRYSDSWPSKITLPKW--VHADALFH 176
>SPAC3G9.13c |msw1||mitochondrial tryptophan-tRNA ligase Msw1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +2
Query: 17 NW*SKLRKWFRISEKRSCC*FSKCF 91
N+ L++W ++ E+ + FSKCF
Sbjct: 30 NYLGSLKQWVQLQEEAARTPFSKCF 54
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,607
Number of Sequences: 5004
Number of extensions: 43421
Number of successful extensions: 157
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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