Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m15f
         (583 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles ...    25   1.4  
AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcript...    24   3.1  

>M93691-2|AAA29365.1| 1222|Anopheles gambiae protein ( Anopheles
           gambiae RT2 retroposon. ).
          Length = 1222

 Score = 25.4 bits (53), Expect = 1.4
 Identities = 18/60 (30%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = -1

Query: 508 GTPPMLSHL--YLEPSF*TPQQPELYLCQKTVEQ--LSTLQRRSRHRHPSLGRGKGSCKK 341
           GTPP    L  + + +  + QQ +    Q++++Q  LS  Q++ R R PS  +G  S ++
Sbjct: 220 GTPPSPEQLQNHQQTAQQSSQQQQQQQQQQSLQQQQLSQQQQQQRQRQPSSQQGDSSSQR 279


>AB090813-2|BAC57902.1| 1099|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1099

 Score = 24.2 bits (50), Expect = 3.1
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = +1

Query: 271 TQEEWLSLWDKYAQTSTPQEW 333
           T E+W   WD  A TS    W
Sbjct: 873 TIEQWQQQWDAEADTSRHTRW 893


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 554,299
Number of Sequences: 2352
Number of extensions: 10494
Number of successful extensions: 30
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 55506924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)