Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m15f
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   3.8  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    22   5.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.1  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.9  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    21   8.9  

>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = +1

Query: 115 IEKSDFEKSAEGLAKARGWA 174
           + +  F+K+  GL ++R W+
Sbjct: 344 LARKQFQKNTTGLERSRSWS 363


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 497 GRSTRLYLKSISRVMIP 547
           GR+T +Y+  +SR   P
Sbjct: 352 GRATAIYIDKVSRFFFP 368


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +1

Query: 247 DIDGDGKITQEEWLSLWDKYAQTS 318
           D DGDGK+   E+   + K    S
Sbjct: 284 DTDGDGKLNVNEFYMAFSKLYSVS 307


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = -3

Query: 128 SDFSIVPLLSVSKNTWKTSNNFFF 57
           S +++V       ++W+ ++NFF+
Sbjct: 195 SGYALVVYSWAKNDSWRITHNFFY 218


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -3

Query: 101 SVSKNTWKTSNNFFFLKSETIFEAYFTNYIVTL 3
           S+S N    +NN+ +  +    + Y+ NYI+ +
Sbjct: 317 SLSNNYNYNNNNYKYNYNNYNKKLYYKNYIINI 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,232
Number of Sequences: 438
Number of extensions: 2985
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)