Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m14r
         (670 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    29   0.46 
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    27   2.4  
SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces po...    27   2.4  
SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5 |Schizosac...    27   3.2  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   7.5  
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo...    25   9.9  
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p...    25   9.9  
SPBC725.14 |arg6||acetylglutamate synthase Arg6 |Schizosaccharom...    25   9.9  

>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 29.5 bits (63), Expect = 0.46
 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
 Frame = -1

Query: 289 ALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINLFGREVGPAVNNFLEKIPVY 110
           A E  +A    S  L  N+    + AAIT    K  +  + F +E G  V    E+I   
Sbjct: 74  AHEAFIASKIVSGDLKTNL---QVNAAITYCKDKDTIDESEFDKETGVGVVLTPEQIEQL 130

Query: 109 LTDYAAE-VSRVLEYR 65
           + DY AE  S++LE R
Sbjct: 131 VGDYVAENKSKILEQR 146


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/40 (35%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
 Frame = -1

Query: 211 AITIGDVKSNLQINLFGREVGPAVNNFL-EKIPVYLTDYA 95
           AITIGD  + L  +   +++GP V +F  + +P +LT ++
Sbjct: 178 AITIGDNSTLLYTSWLFQKIGPPVLSFSDDDVPGFLTHFS 217


>SPBC1604.18c |||vacuolar sorting protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 449

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 11/40 (27%), Positives = 21/40 (52%)
 Frame = +2

Query: 218 DVTDNDVVCXGDGSGSLSNDVLKGKSSGSERPQDAAENAD 337
           +  DN ++     SGS + D +  +  G+E+ +D  EN +
Sbjct: 325 NAVDNKILLIAMSSGSEALDAILAQMGGTEKVEDVLENVN 364


>SPAC1002.15c |pmc5|med6|mediator complex subunit Pmc5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
 Frame = +2

Query: 266 LSNDVLKGKSSGSERPQD-----AAENADFSFSGTD 358
           LSND L+   S +  P D     + ENAD+SFS  D
Sbjct: 160 LSNDNLEVDHSNTNEPADENKNQSIENADYSFSPED 195


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/36 (41%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 248 GDGSGSLSNDVLKGKSSGSERPQ-DAAENADFSFSG 352
           G GSG L ND L+ K S    P     +NA  S  G
Sbjct: 117 GPGSGKLLNDTLQSKISSIHMPHVQQGDNAVVSSVG 152


>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
           Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 388

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 21/58 (36%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = -1

Query: 352 SAEGEIRIFSRVLRSFASGGLALENVVAEA--TASVSLADNIIVSDI-GAAITIGDVK 188
           S +GEI   + V  +  + G  L NVV EA   A     D +I SD+  AA  + D+K
Sbjct: 320 SKQGEIDYEALVKLTDGTNGADLRNVVTEAGFIAIKEDRDYVIQSDLMSAARKVADLK 377


>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = +1

Query: 589 ITMSRMR*ELGSKSTSRCXXADTQA 663
           I   +MR ELG   T RC   D QA
Sbjct: 212 ILFGKMRLELGDHVTVRCPKTDLQA 236


>SPBC725.14 |arg6||acetylglutamate synthase Arg6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 500

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 162 PKRLIWRLDLTSPI 203
           PK LIWR  LT+P+
Sbjct: 436 PKELIWRSRLTNPV 449


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,290,043
Number of Sequences: 5004
Number of extensions: 41466
Number of successful extensions: 124
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)