Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m14r
(670 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,422... 31 0.63
12_01_0204 + 1539859-1540158 30 1.5
04_04_1110 + 30973202-30973870 30 1.5
07_03_1396 - 26259614-26259739,26259853-26259939,26260032-262604... 29 3.3
02_04_0267 - 21430370-21430474,21430559-21430618,21430937-214310... 29 4.4
05_06_0110 + 25632514-25632834,25633200-25634039 28 5.9
02_05_1057 + 33809982-33810366,33810436-33810687,33810727-338109... 28 5.9
05_01_0579 - 5196888-5196970,5197063-5197621,5197704-5197786,519... 28 7.7
>11_01_0533 + 4214900-4215162,4215986-4219043,4219613-4221539,
4221561-4222094,4222388-4222842,4223073-4223189,
4223319-4223477
Length = 2170
Score = 31.5 bits (68), Expect = 0.63
Identities = 26/117 (22%), Positives = 50/117 (42%), Gaps = 2/117 (1%)
Frame = -1
Query: 367 SASVGSAEGEIRIFSRVLRSFASGGLALENVVAEATASVSLADNIIVSD--IGAAITIGD 194
S S E +R +R+L + +A + V + S N +S+ IGA I +G
Sbjct: 1440 SGSTFVVEPAVRALNRLLDEEYNAEIAATSEVVDLLVSFVPGTNHQLSEACIGALIKLGK 1499
Query: 193 VKSNLQINLFGREVGPAVNNFLEKIPVYLTDYAAEVSRVLEYRRPTRHQQITCKLLE 23
+ N ++ + + V + + +PV ++ AE+ R+L K++E
Sbjct: 1500 DRPNCKLEMVKAGIIEHVLDMILDVPVSVSSSIAELLRILTNNSGIAKSSAAAKMVE 1556
>12_01_0204 + 1539859-1540158
Length = 99
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 523 YAGSWSPPGASDIINFSGRVTDVKADD 443
+AGSW+ G + +F GRVT V+ D
Sbjct: 38 HAGSWNGEGQGGLAHFGGRVTRVRRGD 64
>04_04_1110 + 30973202-30973870
Length = 222
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/58 (27%), Positives = 28/58 (48%)
Frame = +3
Query: 183 LDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRLKMRISPSAEP 356
L + + + +P S T+ S+R+T A A ++A P + L L M +A+P
Sbjct: 97 LPKAAALAVVSPTSSTVESSSRDTPAAAPVAAAAKAQVPASPSLDLSLGMSAMVAAQP 154
>07_03_1396 -
26259614-26259739,26259853-26259939,26260032-26260409,
26260497-26260692,26260794-26261032,26261132-26261272
Length = 388
Score = 29.1 bits (62), Expect = 3.3
Identities = 25/103 (24%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Frame = -1
Query: 328 FSRVLRSFASGGLALENVVAEATASVSL-ADNIIVSDIGAAITIGDVKSNLQINLFG--- 161
FS++ +F S A+ +V+ + AS + N + D A ++S I FG
Sbjct: 236 FSQIPINFDSFDAAIASVIGQQQASNQMKVSNPSLWDAEEACHAFPLQSQTSIRTFGSGP 295
Query: 160 REVGPAVNNFLEKIPVYLTDYAAEVSRVLEYRRPTRHQQITCK 32
G ++ L IP +TD + + P+ H ++CK
Sbjct: 296 NHSGAITSSILGTIPECVTDVDQQCFTEVWEEEPSPHIPLSCK 338
>02_04_0267 -
21430370-21430474,21430559-21430618,21430937-21431046,
21431220-21431295,21431541-21431594,21431935-21432006,
21432088-21432173,21432694-21432750,21432886-21432991
Length = 241
Score = 28.7 bits (61), Expect = 4.4
Identities = 19/102 (18%), Positives = 44/102 (43%), Gaps = 1/102 (0%)
Frame = -1
Query: 469 RVTDVKADDFSSLH-LRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVLRSFASGG 293
++ + LH L + ++ ++ ++P + ++ + +L SF +G
Sbjct: 107 QIASIVCSGIQPLHNLTVLRFIEKKVGTGESIPWTQQQIDRGFADLLLCHTMLTSFPNG- 165
Query: 292 LALENVVAEATASVSLADNIIVSDIGAAITIGDVKSNLQINL 167
+A EN+V + D + ++D+ A I + QIN+
Sbjct: 166 VAAENLVKGCAGKYATGDEVRLADVFLAPQIYAAVTRFQINM 207
>05_06_0110 + 25632514-25632834,25633200-25634039
Length = 386
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/71 (29%), Positives = 31/71 (43%)
Frame = +3
Query: 348 AEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPEKLMMSDAPGGLQEPA*P 527
A PT+A G AR+K SRV + L S P ++S + G PA P
Sbjct: 164 ALPTEAPVPGKARSKRSRVAPCSWSSRLMVLPPPP-ASPPSPASAVISPSESGTAAPAFP 222
Query: 528 SRRRGSAALNK 560
+++ +A K
Sbjct: 223 AKKAAKSAKKK 233
>02_05_1057 +
33809982-33810366,33810436-33810687,33810727-33810926,
33811021-33811122
Length = 312
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = +2
Query: 233 DVVCXGDGSGSLSNDVLKGKSSGSERPQDAA 325
+V C G G G+++ D +G SG R DAA
Sbjct: 120 NVGCIGGGGGNITVDGFRGGGSGGGRGGDAA 150
>05_01_0579 -
5196888-5196970,5197063-5197621,5197704-5197786,
5199165-5199279,5199376-5199473,5200136-5200183,
5200313-5200415,5201003-5201119,5201254-5201430,
5202563-5202593,5203492-5203604,5203824-5204036
Length = 579
Score = 27.9 bits (59), Expect = 7.7
Identities = 31/110 (28%), Positives = 46/110 (41%), Gaps = 2/110 (1%)
Frame = -1
Query: 493 SDIINFSGRVTDVKADDFSSLHLRRVSYVGTRLNLVLAVPRVSASVGSAEGEIRIFSRVL 314
S++++FS + F S L + G+ V P VSASV S G F +
Sbjct: 452 SEMMSFSTPLLQKLERCFPSNMLVDLPREGSSRTCVFHFPAVSASVVSLTGAGDCFVGGV 511
Query: 313 RSFASGGLALENVVAE--ATASVSLADNIIVSDIGAAITIGDVKSNLQIN 170
S GGL + VA A A S+ + D +A TI + + I+
Sbjct: 512 ISALCGGLGMMQSVAVGIAIAKSSVESEANIPDKFSAATIAGITPCISIS 561
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,995,854
Number of Sequences: 37544
Number of extensions: 313800
Number of successful extensions: 1064
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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