Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m14r
         (670 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42870.1 68418.m05225 lipin family protein contains Pfam prof...    30   1.6  
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF...    29   2.1  
At1g55830.1 68414.m06402 expressed protein similar to M-type 9 p...    29   2.1  
At5g12430.1 68418.m01461 DNAJ heat shock N-terminal domain-conta...    29   3.7  
At3g13410.1 68416.m01686 expressed protein                             28   4.9  
At5g66040.1 68418.m08316 senescence-associated family protein al...    28   6.5  
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein...    28   6.5  
At5g15130.1 68418.m01773 WRKY family transcription factor contai...    28   6.5  
At2g45680.1 68415.m05680 TCP family transcription factor, putati...    28   6.5  
At1g35420.1 68414.m04394 dienelactone hydrolase family protein l...    27   8.5  

>At5g42870.1 68418.m05225 lipin family protein contains Pfam
           profile: PF04571 lipin, N-terminal conserved region
          Length = 930

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 24/80 (30%), Positives = 32/80 (40%)
 Frame = +2

Query: 203 SYCSSDVTDNDVVCXGDGSGSLSNDVLKGKSSGSERPQDAAENADFSFSGTD*C*NSGNS 382
           S   S V D + +   D   S  +      +SG    Q   E   FSFS  D C   GNS
Sbjct: 353 SSTGSPVQDENKITIKDMHISAGDFEKSQSASGESILQPEIEEEQFSFSDLDECKPGGNS 412

Query: 383 QD*VESGADVADTTQMQGAE 442
                 G+  +DT ++ G E
Sbjct: 413 ----SVGSSSSDTVKVDGKE 428


>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
           PF02984: Cyclin, C-terminal domain
          Length = 1025

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -1

Query: 127 EKIPVYLTDYAAEVSRVLEYRRPTRHQQITCKLLERYLVNQK 2
           E+IP++ + +   V  +L+  R    Q + C+ L  +++NQK
Sbjct: 111 EQIPLFSSGFLRTVQALLDQTRQDEMQIVGCQSLFEFVINQK 152


>At1g55830.1 68414.m06402 expressed protein similar to M-type 9
           protein (GI:507127) [Streptococcus pyogenes]
          Length = 509

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 1/91 (1%)
 Frame = +3

Query: 129 RKLLTAGP-TSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEA 305
           RK LTAG   SRPK   +R D++  +++      T  +  ++ EAV    T +      +
Sbjct: 130 RKTLTAGDIASRPKMETFR-DISDDMMVNEDKDETFDMHIQKVEAVLKDLTMTSEKSHSS 188

Query: 306 KDLRTRLKMRISPSAEPTDAETLGTARTKLS 398
             L       +  S++ TD + +   R+ LS
Sbjct: 189 DSLAKNTSANVDFSSQKTD-DPVTDVRSDLS 218


>At5g12430.1 68418.m01461 DNAJ heat shock N-terminal
           domain-containing protein similarity to
           TETRATRICOPEPTIDE REPEAT PROTEIN 2 , human,
           SWISSPROT:TTC2_HUMAN; contains Pfam profiles PF00226:
           DnaJ domain, PF00515: TPR Domain
          Length = 1165

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/59 (33%), Positives = 26/59 (44%)
 Frame = -1

Query: 577 SMKSVNLLRAADPLRRDGYAGSWSPPGASDIINFSGRVTDVKADDFSSLHLRRVSYVGT 401
           SM  V     +D L R    GS +  G     +F G V + K  DF+S      S+VGT
Sbjct: 214 SMDYVGEKILSDDLSRKLSVGSMTTDGNHSGDSFQGSVNEKKVHDFNSSCPMNYSFVGT 272


>At3g13410.1 68416.m01686 expressed protein
          Length = 321

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 143 GWSNFXSEEIDLEVRFDIANSYCSSDVTDNDVVCXGDGSGSLSN 274
           GWSNF   E  LE   D+A  +   ++  +DV    +   +L N
Sbjct: 70  GWSNFLCSEKKLEQPVDVALVFIGRELLSSDVSSKRNSDPALVN 113


>At5g66040.1 68418.m08316 senescence-associated family protein
           almost identical to ketoconazole resistant protein
           GI:928938 from [Arabidopsis thaliana]  full-length cDNA:
           Ceres:101608.
          Length = 120

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 2/68 (2%)
 Frame = +3

Query: 396 SRVPT*LTRRKCRELKSSA--LTSVTRPEKLMMSDAPGGLQEPA*PSRRRGSAALNKFTD 569
           SRVP+ ++     +L  +      V  PE+     A G +  P      RG++ ++K  D
Sbjct: 5   SRVPSSVSVTVAHDLLLAGHRYLDVRTPEEFSQGHACGAINVPY---MNRGASGMSKNPD 61

Query: 570 FIEQV*DH 593
           F+EQV  H
Sbjct: 62  FLEQVSSH 69


>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
           contains Pfam domain PF00098: Zinc knuckle
          Length = 831

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +2

Query: 167 EIDLEVRFDIANSY--CSSDVTDNDVVCXGDGSGSLSNDVLKGKSSGSERPQDAAEN 331
           E  +E   DI N    CS   +D+     G+    L N+ L+ +S+GS+   D A N
Sbjct: 126 EDKVETNDDIKNEEAGCSKRSSDSPKAMEGETRDLLVNEQLRMESAGSQEEGDKAHN 182


>At5g15130.1 68418.m01773 WRKY family transcription factor contains
           Pfam profile: PF03106 WRKY DNA -binding domain; TMV
           response-related gene product, Nicotiana tabacum,
           EMBL:AB024510
          Length = 548

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = +2

Query: 185 RFDIANSYCSSDVTDNDVVCXGDGSGSLSNDVLKGKSSGSERPQDAAENADFS 343
           R  I+N+   ++ T+N+  C G  S  L ++++    +G+   Q +++   FS
Sbjct: 475 RHSISNNIQQTNTTNNNKGCGGYFSSLLMSNIMASNQTGASLDQPSSQLPPFS 527


>At2g45680.1 68415.m05680 TCP family transcription factor, putative
           similar to PCF2 (GI:2580440) [Oryza sativa]
          Length = 356

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 25/110 (22%), Positives = 46/110 (41%)
 Frame = +3

Query: 147 GPTSRPKRLIWRLDLTSPIVIAAPMSLTMMLSARETEAVASATTFSRASPPEAKDLRTRL 326
           G  S  + + W L+   P +IAA  + T+   A          T + A     ++L  + 
Sbjct: 107 GHKSDGETIRWLLENAEPAIIAATGTGTVPAIAMSVNGTLKIPTTTNADSDMGENLMKKK 166

Query: 327 KMRISPSAEPTDAETLGTARTKLSRVPT*LTRRKCRELKSSALTSVTRPE 476
           + R S ++E  D     +A + L+ + T  T +  + L SS +     P+
Sbjct: 167 RKRPS-NSEYIDISDAVSASSGLAPIATTTTIQPPQALASSTVAQQLLPQ 215


>At1g35420.1 68414.m04394 dienelactone hydrolase family protein low
           similarity to dienelactone hydrolase [Rhodococcus
           opacus] GI:23094407; contains Pfam profile PF01738:
           Dienelactone hydrolase family
          Length = 310

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 472 GRVTDVKADDFSSLHLRRVSYVGTRLNLVLA 380
           GRV DV A D S      VS+ GTR++  +A
Sbjct: 205 GRVVDVLATDESGYFSTGVSFYGTRIDSAVA 235


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,351,896
Number of Sequences: 28952
Number of extensions: 232046
Number of successful extensions: 656
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)