Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m13f
         (604 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC151244-1|AAI51245.1| 1039|Homo sapiens FERM domain containing ...    31   3.1  
AL365495-1|CAI13296.1| 1039|Homo sapiens novel protein (FLJ10210...    31   3.1  
AL157392-5|CAI13127.1| 1039|Homo sapiens novel protein (FLJ10210...    31   3.1  
AB037715-1|BAA92532.1| 1051|Homo sapiens KIAA1294 protein protein.     31   3.1  

>BC151244-1|AAI51245.1| 1039|Homo sapiens FERM domain containing 4A
           protein.
          Length = 1039

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 373 SSRRVHKLKIHXXXXXXXXXXXDPCELCRSSDADSPDASTGRRRESHVENPPVNCSS-TA 197
           S  R+H L +H               L   +D  SPD  T R R S+  +P  +CSS T+
Sbjct: 694 SPTRLHSLALHFRHRSSSLESQGKL-LGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTS 752

Query: 196 HNKA 185
           H+ +
Sbjct: 753 HSSS 756


>AL365495-1|CAI13296.1| 1039|Homo sapiens novel protein (FLJ10210)
           protein.
          Length = 1039

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 373 SSRRVHKLKIHXXXXXXXXXXXDPCELCRSSDADSPDASTGRRRESHVENPPVNCSS-TA 197
           S  R+H L +H               L   +D  SPD  T R R S+  +P  +CSS T+
Sbjct: 694 SPTRLHSLALHFRHRSSSLESQGKL-LGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTS 752

Query: 196 HNKA 185
           H+ +
Sbjct: 753 HSSS 756


>AL157392-5|CAI13127.1| 1039|Homo sapiens novel protein (FLJ10210)
           protein.
          Length = 1039

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 373 SSRRVHKLKIHXXXXXXXXXXXDPCELCRSSDADSPDASTGRRRESHVENPPVNCSS-TA 197
           S  R+H L +H               L   +D  SPD  T R R S+  +P  +CSS T+
Sbjct: 694 SPTRLHSLALHFRHRSSSLESQGKL-LGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTS 752

Query: 196 HNKA 185
           H+ +
Sbjct: 753 HSSS 756


>AB037715-1|BAA92532.1| 1051|Homo sapiens KIAA1294 protein protein.
          Length = 1051

 Score = 31.1 bits (67), Expect = 3.1
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
 Frame = -1

Query: 373 SSRRVHKLKIHXXXXXXXXXXXDPCELCRSSDADSPDASTGRRRESHVENPPVNCSS-TA 197
           S  R+H L +H               L   +D  SPD  T R R S+  +P  +CSS T+
Sbjct: 706 SPTRLHSLALHFRHRSSSLESQGKL-LGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTS 764

Query: 196 HNKA 185
           H+ +
Sbjct: 765 HSSS 768


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,243,660
Number of Sequences: 237096
Number of extensions: 1520530
Number of successful extensions: 3047
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2904
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3047
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6354183230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)