Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m12r
(724 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like p... 101 4e-22
U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like p... 93 1e-19
U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like pr... 71 6e-13
AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed ... 31 1.1
U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna bindi... 30 1.9
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ... 29 3.4
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ... 29 3.4
Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical p... 29 4.4
Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical pr... 29 4.4
AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cycl... 29 4.4
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 29 4.4
AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical ... 28 5.9
Z81533-10|CAB04329.1| 109|Caenorhabditis elegans Hypothetical p... 28 7.8
AF003134-1|AAB54144.1| 522|Caenorhabditis elegans Trypsin-like ... 28 7.8
AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical ... 28 7.8
>U29380-14|AAA68746.2| 293|Caenorhabditis elegans Trypsin-like
protease protein 1 protein.
Length = 293
Score = 101 bits (243), Expect = 4e-22
Identities = 71/205 (34%), Positives = 101/205 (49%), Gaps = 7/205 (3%)
Frame = -3
Query: 620 CGGNILNQRSILSAAHCPYGDATGR-WRIRVGSTFANSGGVVHNVNRIIIHPNYNRRTAD 444
CGG++++ +L+AAHC D + +RVG + SG H V + IHP YN
Sbjct: 84 CGGSLIDPNFVLTAAHCFAKDRRPTSYSVRVGGHRSGSGSP-HRVTAVSIHPWYNIGFPS 142
Query: 443 S-DLCILRSNSNIAYNNNVRPINIAGANYNLGDNQVVWAAGWGATSLGGS-NSEQLRHVQ 270
S D I+R + + + RPI + + +N++ GWG+T G S ++ LR +
Sbjct: 143 SYDFAIMRIHPPVNTSTTARPICLP--SLPAVENRLCVVTGWGSTIEGSSLSAPTLREIH 200
Query: 269 VWTINQNACVQRYRPINRAITANMLCSGVLDVGGRDQCQGDSGGPLLHNR----VLVGVC 102
V ++ C I R +MLC+G G D CQGDSGGPL+ R L GV
Sbjct: 201 VPLLSTLFCSSLPNYIGRIHLPSMLCAGY-SYGKIDSCQGDSGGPLMCARDGHWELTGVV 259
Query: 101 SWGQYCADRRFPGVNVRVSRFTSWI 27
SWG CA PGV V ++WI
Sbjct: 260 SWGIGCARPGMPGVYGNVHSASTWI 284
>U58751-11|AAB00662.1| 265|Caenorhabditis elegans Trypsin-like
protease protein 2 protein.
Length = 265
Score = 93.5 bits (222), Expect = 1e-19
Identities = 65/210 (30%), Positives = 104/210 (49%), Gaps = 10/210 (4%)
Frame = -3
Query: 620 CGGNILNQRSILSAAHCPYGDA-TGRWRIRVGSTFANS---GGVVHNVNRIIIHPNYNRR 453
CG +IL++ +++AAHC D + + VG N + + RI +P Y +
Sbjct: 54 CGASILDKTHLITAAHCFEEDERVSSYEVVVGDWDNNQTDGNEQIFYLQRIHFYPLY-KD 112
Query: 452 TADSDLCILR-SNSNIAYNNNVRPINIAGANYNLGDNQVVWAAGWGATSLGGSNSEQLRH 276
D+ IL I +N +PI + ++ + +GWG S+G +E+L+
Sbjct: 113 IFSHDIAILEIPYPGIEFNEYAQPICLPSKDFVYTPGRQCVVSGWG--SMGLRYAERLQA 170
Query: 275 VQVWTINQNACVQRYRPINRAITANMLCSGVLDVGGRDQCQGDSGGPLLHNR-----VLV 111
+ IN+ CV + I +++ + C+G L+ GG D CQGDSGGP R VL
Sbjct: 171 ALIPIINRFDCVNSSQ-IYSSMSRSAFCAGYLE-GGIDSCQGDSGGPFACRREDGAFVLA 228
Query: 110 GVCSWGQYCADRRFPGVNVRVSRFTSWIQS 21
GV SWG CA ++ PG+ V+ + SWI +
Sbjct: 229 GVISWGDGCAQKKQPGIYTMVAPYLSWISA 258
>U70848-2|AAB09110.4| 313|Caenorhabditis elegans Trypsin-like
protease protein 3 protein.
Length = 313
Score = 71.3 bits (167), Expect = 6e-13
Identities = 66/220 (30%), Positives = 107/220 (48%), Gaps = 21/220 (9%)
Frame = -3
Query: 620 CGGNILNQRSILSAAHCPYGDATGRWRIRVGSTFANSGGVVHNVNRIIIHPNYNRRTADS 441
CG +++ +++AAHC T R + V N+ +V IH YN +TAD+
Sbjct: 66 CGATVIDDFWLVTAAHCALQLQT-RSFVYVREP-KNNRERSFSVKEAYIHSGYNNQTADN 123
Query: 440 DLCILRSNSNIAYNNNVRPINIAGANYNL---GDNQVVWAAG--WGATSLGGS---NSEQ 285
D+ +LR +S+++ ++P+ + + L N VV G G S G NS+
Sbjct: 124 DIALLRISSDLS-KLGIKPVCLVHDDSKLLKQYKNGVVIGYGLTLGEDSSGEPKLINSQT 182
Query: 284 LRHVQVWTINQNACVQRYR---PINRAITANMLCSGVLDVGGRDQCQGDSGGPLLHNR-- 120
L+ V I+ + CV+ +R ++ IT +C+G G GDSGGPLL ++
Sbjct: 183 LQSTSVPIISDDDCVKTWRFLSLLSVKITGYQICAGAYLHG---TAPGDSGGPLLIHKSN 239
Query: 119 ---VLVGVCSWGQYCAD-----RRFPGVNVRVSRFTSWIQ 24
V +G+ S+G D +FPGV R+S++ WIQ
Sbjct: 240 GEYVQIGITSYGADGLDGVIDQGKFPGVYTRISKYVPWIQ 279
>AF039047-13|AAM15587.1| 402|Caenorhabditis elegans Coexpressed
with polycystins protein4 protein.
Length = 402
Score = 30.7 bits (66), Expect = 1.1
Identities = 18/60 (30%), Positives = 29/60 (48%)
Frame = +3
Query: 441 TVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRSLVKDVSTT 620
T ++T +I G +V T TV GT T PT + T ++GT ++ + +TT
Sbjct: 205 TTTTTVLINGTTTTTVPTNETTTTVPLNGTTTTVPTNETTTTSPLNGTTTTTVPINGATT 264
>U23515-6|ABC71805.1| 1065|Caenorhabditis elegans Larp (rna binding
la related protein)homolog protein 1, isoform b protein.
Length = 1065
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +1
Query: 64 PGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEHNMLAVIA 216
P K+R+ + P++ P + + R + PW S P + P + V A
Sbjct: 109 PEKKRAVEPTPKQAAPIKEKSKSRESKKEPWKTSTAPAATAPVTETVTVAA 159
>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform a protein.
Length = 1544
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 37 VKRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEH 195
+KR TR L P K+ Q+ R R + PP+SP TS P+H
Sbjct: 1493 LKRRTRELDPEKKGDKTNIVQD---LRARFEMKSPPKSPPKDDEEGTSTDPKH 1542
>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
potassium channelsprotein 11, isoform b protein.
Length = 1720
Score = 29.1 bits (62), Expect = 3.4
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +1
Query: 37 VKRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPEH 195
+KR TR L P K+ Q+ R R + PP+SP TS P+H
Sbjct: 1669 LKRRTRELDPEKKGDKTNIVQD---LRARFEMKSPPKSPPKDDEEGTSTDPKH 1718
>Z81044-11|CAB02809.2| 476|Caenorhabditis elegans Hypothetical
protein C30H6.4 protein.
Length = 476
Score = 28.7 bits (61), Expect = 4.4
Identities = 25/104 (24%), Positives = 42/104 (40%), Gaps = 2/104 (1%)
Frame = +3
Query: 306 ERCSTPTSSPNNLVITKIVIGTSNINRTNVV--VISYVGITA*DAEVTVSSTSVIVGMND 479
E T++P T I TS+ T+ V++ +T+ T +ST
Sbjct: 256 ETTKPTTTTPTTTTTTTIPSTTSSTTSTSTTTSVVTTTTVTSTTEPTTSTSTPT------ 309
Query: 480 NSVHVMHNTPTVGKGGTNTNTPTACSVTVWTVSGTKDRSLVKDV 611
+ + TP+ T T+T T S + T+S TK + D+
Sbjct: 310 TTTTMQTTTPSTTSTPTTTSTTTTTSASTTTISTTKPPTTQIDI 353
>Z74473-5|CAI79195.1| 245|Caenorhabditis elegans Hypothetical
protein F56H9.6 protein.
Length = 245
Score = 28.7 bits (61), Expect = 4.4
Identities = 20/84 (23%), Positives = 30/84 (35%)
Frame = +3
Query: 369 TSNINRTNVVVISYVGITA*DAEVTVSSTSVIVGMNDNSVHVMHNTPTVGKGGTNTNTPT 548
T++ T + IT EVT ++ V + T T T T TPT
Sbjct: 29 TADPTTTTTEATTTTEITTTTEEVTTTTEPVTTTTTPTTTSTTSTTTTTTPTTTTTTTPT 88
Query: 549 ACSVTVWTVSGTKDRSLVKDVSTT 620
+ T T + T + +TT
Sbjct: 89 TTTSTTSTTTTTTPTTTTSTTTTT 112
>AF022968-5|AAB69885.2| 1080|Caenorhabditis elegans Adenylyl cyclase
protein 2 protein.
Length = 1080
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = -3
Query: 461 NRRTADSDLCILRSNSNIAYNNNVRPINIAGANYNL 354
N AD D L ++ YNNN+R N+A N NL
Sbjct: 913 NESEADYDDIYLEKQNSGKYNNNIRHGNMAFRNANL 948
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 32 KR*NGKRER*HQGSDGQRSTVPKSR-HQRGRGCGGEDHRSHPGTGRDHRRPK 184
KR + +G+D +RST H+ R HR H G R+HR K
Sbjct: 259 KRKRSRSRSTDRGADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHREHREHK 310
>AF125964-1|AAD14753.1| 471|Caenorhabditis elegans Hypothetical
protein W03G1.5 protein.
Length = 471
Score = 28.3 bits (60), Expect = 5.9
Identities = 19/45 (42%), Positives = 19/45 (42%), Gaps = 1/45 (2%)
Frame = +2
Query: 56 R*HQGSDGQRSTVPKSRHQRGRGCGGEDHRS-HPGTGRDHRRPKH 187
R H G G RS P RH G G GG RS PG H H
Sbjct: 236 RGHGGRHGSRSGSPGGRHGHG-GHGGHGSRSGSPGGRHGHGGSGH 279
>Z81533-10|CAB04329.1| 109|Caenorhabditis elegans Hypothetical
protein F36G9.15 protein.
Length = 109
Score = 27.9 bits (59), Expect = 7.8
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 64 PGKRRSAQYCPQEQT-PTRTRLWRRG 138
P K +SAQ CP QT P +T + R G
Sbjct: 53 PAKEKSAQTCPTAQTPPAKTPMERSG 78
>AF003134-1|AAB54144.1| 522|Caenorhabditis elegans Trypsin-like
protease protein 7 protein.
Length = 522
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -3
Query: 623 SCGGNILNQRSILSAAHCPYG-DATGRWRIRVGSTFANS 510
+C G I++ R IL A HC G + G W + + TF S
Sbjct: 192 TCTGTIVSPRHILIATHCFAGQNRDGSWNL-IEDTFDRS 229
>AC024826-8|AAF60795.2| 580|Caenorhabditis elegans Hypothetical
protein Y55F3AM.3a protein.
Length = 580
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 40 KRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPES 150
+R +RT + +RRS +TP R RR PP S
Sbjct: 99 RRRSRTRSRDRRRSPPRRRDRRTPPRRSPGRRSPPRS 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,346,987
Number of Sequences: 27780
Number of extensions: 428168
Number of successful extensions: 1358
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1342
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -