Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m11r
         (670 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-2140|AAF53151.1|   69|Drosophila melanogaster CG6770-PA...   118   5e-27
X04228-2|CAA27809.1|   96|Drosophila melanogaster protein ( Dros...    28   10.0 
X04227-2|CAA27806.1|   96|Drosophila melanogaster URF 2 protein.       28   10.0 

>AE014134-2140|AAF53151.1|   69|Drosophila melanogaster CG6770-PA
           protein.
          Length = 69

 Score =  118 bits (285), Expect = 5e-27
 Identities = 49/62 (79%), Positives = 56/62 (90%)
 Frame = -1

Query: 571 MSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHN 392
           MSEA FDEY++YNFDHDKHIF+GH GKQR K+EA+EHTNHFDPSGHSRKI+TKLMN  +N
Sbjct: 1   MSEAHFDEYEHYNFDHDKHIFSGHSGKQRNKREANEHTNHFDPSGHSRKILTKLMNTNNN 60

Query: 391 KK 386
            K
Sbjct: 61  NK 62


>X04228-2|CAA27809.1|   96|Drosophila melanogaster protein (
           Drosophila mRNA forCc gene from dopa decarboxylase gene
           cluster;  mapping2.0 kb from the 5'end of Ddc gene.  ).
          Length = 96

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 324 TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 232
           +I  P  RRT   R+P   S GCS   S +HP
Sbjct: 11  SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42


>X04227-2|CAA27806.1|   96|Drosophila melanogaster URF 2 protein.
          Length = 96

 Score = 28.3 bits (60), Expect = 10.0
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -2

Query: 324 TIELPNERRTL-LRIPEECSGGCSSQRSMEHP 232
           +I  P  RRT   R+P   S GCS   S +HP
Sbjct: 11  SIASPASRRTWSARVPTSSSHGCSGPSSSDHP 42


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,673,246
Number of Sequences: 53049
Number of extensions: 622692
Number of successful extensions: 1731
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1645
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1730
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2889369000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)