Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m11f
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   7e-12
SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)              38   0.006
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      33   0.18 
SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.55 
SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)              31   0.55 
SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)              29   2.9  
SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)                   28   3.8  
SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.8  
SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)                 28   3.8  
SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)            27   6.7  
SB_58897| Best HMM Match : Ion_trans_2 (HMM E-Value=4.8e-14)           27   8.9  
SB_11254| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.9  
SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)                 27   8.9  

>SB_56655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 66

 Score = 67.3 bits (157), Expect = 7e-12
 Identities = 30/65 (46%), Positives = 42/65 (64%)
 Frame = +1

Query: 106 EAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKK 285
           E +FDEYDYYNFD  +++  G+  K R+K+EA  +TN F P GH RK++ K  N E N+ 
Sbjct: 2   EPYFDEYDYYNFD--RNVVEGNTRKGRSKREACLNTNRFCPGGHERKVLEKYRNTEKNRA 59

Query: 286 TSNTK 300
              +K
Sbjct: 60  AKPSK 64


>SB_24582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 37.5 bits (83), Expect = 0.006
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +1

Query: 118 DEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHS-RKIVTKLMNAEHNKKTSN 294
           D+YD Y+FD   H   G   K ++KKEAS++ N     GHS RK    + + E  +K   
Sbjct: 5   DKYDDYDFDERLH--EGGARKGKSKKEASQNKN-VSTQGHSERKAAEYIQHGEDKRKEEK 61

Query: 295 TK 300
            K
Sbjct: 62  IK 63


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 32.7 bits (71), Expect = 0.18
 Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 296  VFEVFLLCSAFMSFVTIFLEC-PDGSKWLVCSDASFLVRCLP 174
            VF V +L     S + + L C P  S  L CS +SFL+ C P
Sbjct: 1181 VFSVIILFITVFSIIILLLPCSPSSSFSLPCSPSSFLLPCSP 1222



 Score = 27.1 bits (57), Expect = 8.9
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 296  VFEVFLLCSAFMSFVTIFLECPDGSKWLVCSDASFLVRCLP 174
            VF + +L        +  L C   S  L CS +SFL+ C P
Sbjct: 1191 VFSIIILLLPCSPSSSFSLPCSPSSFLLPCSPSSFLLPCSP 1231


>SB_57023| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 388

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = +1

Query: 133 YNFDHDKHIFT-GHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 303
           Y  DHD +    GH     T +   EH  +    GH     T     EH+  TS  +H
Sbjct: 327 YGHDHDTNTLRYGHDHDTNTLRYEQEHDTNTSRYGHDHDTNTLRYGHEHDTNTSRYEH 384


>SB_16697| Best HMM Match : Collagen (HMM E-Value=4.2e-11)
          Length = 1903

 Score = 31.1 bits (67), Expect = 0.55
 Identities = 17/58 (29%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
 Frame = +1

Query: 133 YNFDHDKHIFT-GHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 303
           Y  DHD +    GH     T +   EH  +    GH     T     EH+  TS  +H
Sbjct: 383 YGHDHDTNTLRYGHDHDTNTLRYEQEHDTNTSRYGHDHDTNTLRYGHEHDTNTSRYEH 440


>SB_25338| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1360

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = +1

Query: 178 KQRTKKEA--SEHTNHFDPSGHSRKIVTKLMNAEHNKKTSN 294
           K R  K+A  S++  H++   H R +V+KL+   HN   +N
Sbjct: 490 KDRMHKKAIKSKNQQHWEAFKHQRNLVSKLIKDSHNDYLNN 530


>SB_11110| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 862

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 94  VNMSEAFFDEYDYYNFDHDKHI 159
           V+  +AF+  +DYY F HD ++
Sbjct: 508 VSEGKAFYGSFDYYQFPHDSNL 529


>SB_52316| Best HMM Match : Fun_ATP-synt_8 (HMM E-Value=8)
          Length = 420

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 94  VNMSEAFFDEYDYYNFDHDKHI 159
           V+  +AF+  +DYY F HD ++
Sbjct: 66  VSEGKAFYGSFDYYQFPHDSNL 87


>SB_21915| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 97

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +3

Query: 285 DFKHQTLDGLLINRQLWLAEGLLSCQTKGGRYCGYPRSVRVDARL 419
           +++ Q L G L   QLW+   + SC ++   +CG    + +   L
Sbjct: 53  EYRQQLLSGTLT--QLWVVASMRSCTSRYTGFCGVKEEINLQQAL 95


>SB_452| Best HMM Match : RVT_1 (HMM E-Value=9.9e-25)
          Length = 1486

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 22/76 (28%), Positives = 35/76 (46%)
 Frame = +1

Query: 163  TGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH*MDC*SIDNYG*Q 342
            T  GG++    +A E       SG SRK+V K +  +  K+ S  +       +  YG  
Sbjct: 1319 TATGGERTEVADAREKFTILVASGKSRKMVGKALTHDDVKRMSAVE-------VRKYGRG 1371

Query: 343  KDY*VAKRKEDAIADT 390
             +  +A R  DA+AD+
Sbjct: 1372 YETALASRTSDALADS 1387


>SB_21061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 17/68 (25%), Positives = 31/68 (45%)
 Frame = +1

Query: 97  NMSEAFFDEYDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEH 276
           +++E F + Y+ Y +D      T   G+     E  + ++ + P   SRK  TK+ +   
Sbjct: 294 DIAEDFRERYEAYGYDQHDFPDTSSSGE-----ETLDDSDEWLPGQQSRKTSTKVASGAK 348

Query: 277 NKKTSNTK 300
            +KT   K
Sbjct: 349 KRKTDRGK 356


>SB_4636| Best HMM Match : FGGY_N (HMM E-Value=7.3e-06)
          Length = 512

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 332 MASRRTIELPNERRTLLRIPEEC 400
           + S RT  +PN  RTLL+IP  C
Sbjct: 461 LVSNRTDLIPNINRTLLKIPNYC 483


>SB_55936| Best HMM Match : Paramecium_SA (HMM E-Value=0.56)
          Length = 581

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -1

Query: 358 QLNSPSASHSCLLISNPSSVW 296
           Q  S SASH C  +SNP S W
Sbjct: 528 QCVSASASHRCGRVSNPGSNW 548


>SB_58897| Best HMM Match : Ion_trans_2 (HMM E-Value=4.8e-14)
          Length = 510

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 270 RAQQEDFKHQTLDGLLINR 326
           R   ED KH  LDGLL++R
Sbjct: 303 RLMHEDLKHGKLDGLLLDR 321


>SB_11254| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 73

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 124 YDYYNFDHDKHIFTGHGGKQR 186
           YDY + D+D H +    GKQR
Sbjct: 17  YDYVDLDNDSHDYETMNGKQR 37


>SB_2894| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 217

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +1

Query: 124 YDYYNFDHDKHIFTGHGGKQR 186
           YDY + D+D H +    GKQR
Sbjct: 103 YDYVDLDNDSHDYETMNGKQR 123


>SB_41989| Best HMM Match : RVT_1 (HMM E-Value=1.2e-33)
          Length = 585

 Score = 27.1 bits (57), Expect = 8.9
 Identities = 20/70 (28%), Positives = 33/70 (47%)
 Frame = +2

Query: 287 LQTPNTRWIADQ*TTMASRRTIELPNERRTLLRIPEECSGGCSSQRSMEHPRRFFAHTKF 466
           +QTP+ RW     +   S RT E P E  +   +P+  +GG     S++  R     +K 
Sbjct: 511 MQTPS-RWARRGDSLRDSPRT-ETPGESWSAAYVPDGTTGGDERDDSLDLSRSCGTLSKA 568

Query: 467 LLRPLTEAAI 496
             +  TEA++
Sbjct: 569 FAKSNTEASV 578


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,604,990
Number of Sequences: 59808
Number of extensions: 309168
Number of successful extensions: 796
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 726
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 794
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)