Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m11f
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g67770.1 68414.m07733 RNA-binding protein, putative similar t...    29   1.4  
At3g23190.1 68416.m02924 lesion inducing protein-related similar...    29   2.4  
At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein...    28   4.2  
At4g12820.1 68417.m02010 F-box family protein similar to F-box p...    28   4.2  
At2g42670.1 68415.m05281 expressed protein                             28   4.2  
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family...    27   7.3  
At5g44850.1 68418.m05497 hypothetical protein strong similarity ...    27   9.6  

>At1g67770.1 68414.m07733 RNA-binding protein, putative similar to
           terminal ear1 gb|AAC39463.1
          Length = 527

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +3

Query: 219 LRSVRAFEKDRHETHERRAQQEDFKHQTLDGLLINRQLW 335
           + S RAF + R+   +++ QQ+ F   T  GL+    LW
Sbjct: 127 INSQRAFNEIRYRHMQQQEQQQHFHFTTARGLVSGHSLW 165


>At3g23190.1 68416.m02924 lesion inducing protein-related similar to
           ORF, able to induce HR-like lesions [Nicotiana tabacum]
          Length = 216

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 19/54 (35%), Positives = 27/54 (50%)
 Frame = +1

Query: 124 YDYYNFDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKK 285
           YD+YN D+D+  FT    K    KE  E T   D  G +  + T ++N E  +K
Sbjct: 103 YDFYNRDYDRDHFTVFYTK---FKEFVEETTSAD-GGVAMSLYTSVVNEESRQK 152


>At4g19190.1 68417.m02832 zinc knuckle (CCHC-type) family protein
           contains Pfam domain, PF00098: Zinc knuckle
          Length = 595

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +1

Query: 139 FDHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTKLMNAEHNKKTSNTKH 303
           +D D   F G  G    +     HT H DPS   +  V    N+   K   + KH
Sbjct: 367 YDSDSLSFEG-SGSDSYRLSRRRHTKHVDPSASLKSEVYHQGNSHREKHYYDEKH 420


>At4g12820.1 68417.m02010 F-box family protein similar to F-box
           protein family, AtFBX7 (GI:20197899) [Arabidopsis
           thaliana]
          Length = 442

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 343 SASHSCLLISNPSSVWCL 290
           SAS SCL + NP+S W +
Sbjct: 96  SASESCLAVKNPTSPWII 113


>At2g42670.1 68415.m05281 expressed protein
          Length = 241

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 240 EKDRHETHERRAQQEDFKHQ-TLDGLLINRQLWLAE 344
           E DRH T+ R++++ED   +  +DG ++    WL E
Sbjct: 185 EHDRHCTYFRKSRREDLPGELEVDGEVVTDVTWLEE 220


>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 589

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 142 DHDKHIFTGHGGKQRTKKEASEHTNHFDPSGHSRKIVTK 258
           DH+K      G ++R K + S+H +H     HS+KI T+
Sbjct: 96  DHEKGASKQVGRRERAKPDPSKH-HHRSHLPHSKKIETE 133


>At5g44850.1 68418.m05497 hypothetical protein strong similarity to
           unknown protein (gb AAC79136.1)
          Length = 331

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 299 LVFEVFLLCSAF-MSFVTIFLECPDGSKWL 213
           L  E+ L CSA   S +T  + CPD S WL
Sbjct: 188 LADEMLLRCSAINFSRLTELIICPDESDWL 217


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,697,155
Number of Sequences: 28952
Number of extensions: 204848
Number of successful extensions: 503
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)