Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m09r
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc... 166 3e-42
SPBC16H5.07c |ppa2||serine/threonine protein phosphatase Ppa2|Sc... 27 2.1
SPAC823.15 |ppa1||minor serine/threonine protein phosphatase Ppa... 27 2.8
SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|ch... 27 2.8
SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr 1|... 27 3.7
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 27 3.7
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl... 26 4.9
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch... 25 8.5
SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 25 8.5
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 8.5
>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 166 bits (403), Expect = 3e-42
Identities = 89/233 (38%), Positives = 142/233 (60%), Gaps = 11/233 (4%)
Frame = -3
Query: 730 SYVHICTNEPIHGVEFDFIPDT--KGVPLIADMSSNIMSKKVDVSKFGVIYAGAQKNIGT 557
S V+ C NE +HGVEF+ P KG + D+SSN +S+K+D +K +I+AGAQKN G
Sbjct: 160 SLVYYCDNETVHGVEFNEPPTNIPKGAIRVCDVSSNFISRKIDFTKHDIIFAGAQKNAGP 219
Query: 556 SGVALVIVREDLLNQA---------LPTCPSLLDWTANYKQNSILNTPPMFAIYIMGRVL 404
+G+ +V VR+ +L + +P P++ D+ +S+ NT P+ ++ + L
Sbjct: 220 AGITVVFVRDSVLARPTPAELHKLNIPVSPTVSDYKIMADNHSLYNTLPVATLHAINLGL 279
Query: 403 QWIQRNGGLEGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCPGDDAL 224
+++ +GGL + + +K+ L+Y+T+++ + Y + V RS+MNV FRI L
Sbjct: 280 EYMLEHGGLVALEASSIEKSKLLYDTLDKHD-LYISVVEPAARSRMNVTFRIE---PQEL 335
Query: 223 EKEFLKGAETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKHS 65
E EFL AE L+QLKG+R VGGIRAS+YNA+++E+ + L+ +E F K HS
Sbjct: 336 ESEFLAEAEKHHLVQLKGYRSVGGIRASLYNAISVEQTRRLIDLLESFAKAHS 388
>SPBC16H5.07c |ppa2||serine/threonine protein phosphatase
Ppa2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 27.5 bits (58), Expect = 2.1
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +1
Query: 193 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 279
K ++P+RI LR +H+ Q + FY E
Sbjct: 117 KLRYPNRITILRGNHESRQITQVYGFYDE 145
>SPAC823.15 |ppa1||minor serine/threonine protein phosphatase
Ppa1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 2.8
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 193 KSQHPSRILFLRHHHQGNQF*MAHSFYCE 279
K ++P RI LR +H+ Q + FY E
Sbjct: 104 KIRYPQRITILRGNHESRQITQVYGFYDE 132
>SPBC146.06c |||human MTMR15 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 703
Score = 27.1 bits (57), Expect = 2.8
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 612 TFFDIMFEDISAIKGTPFVS 671
TF+DI+FED+ + +PF S
Sbjct: 540 TFWDILFEDVPGVFQSPFQS 559
>SPAC24H6.03 |cul3|pcu3|cullin 3|Schizosaccharomyces pombe|chr
1|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 3.7
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = -3
Query: 157 GGIRASIYNAVTLEEVQALVQYMEEFYKKHSK*ILLN 47
G I A++ N+VTL + E++YK H LLN
Sbjct: 443 GSIEATLQNSVTLFRFISEKDVFEKYYKTHLAKRLLN 479
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 26.6 bits (56), Expect = 3.7
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 588 ITPNFETSTFFDIMFEDISAIKGT 659
ITPN TS FFD++ +D G+
Sbjct: 1438 ITPNLLTSQFFDVLTKDALYTNGS 1461
>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 4.9
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 525 SSLTMTSATPDVPIFF*APAYITPNFETSTF 617
+ L++ S+TP P+ P Y TP+ S F
Sbjct: 427 NQLSIPSSTPSTPLSDNGPTYSTPHSSLSNF 457
>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +3
Query: 567 FF*APAYITPNFETSTFFDIMFEDISAIKGTPFVSGMKSNS 689
FF A PN S F IM +++ +KG + M ++S
Sbjct: 287 FFLQIAVAIPNGGLSNFSSIMLKNLGYVKGKALLMNMPTSS 327
>SPCC622.01c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 149
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -3
Query: 133 NAVTLEEVQALVQYMEEFYKKHSK*ILLNLYKQYILFVCYLEF 5
+AV E+++ Y E F K +L+ Y+L C++EF
Sbjct: 9 HAVPREQIRRRYSYFEAFEKNCHIQGILSKRALYMLIPCFMEF 51
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.4 bits (53), Expect = 8.5
Identities = 8/25 (32%), Positives = 14/25 (56%)
Frame = -2
Query: 632 KHYVEES*CFKVWGDICWCSKEYWY 558
+H V F+++ + WC +YWY
Sbjct: 195 EHAVAPFFVFQIFCCVLWCLDDYWY 219
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,236,594
Number of Sequences: 5004
Number of extensions: 71663
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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