Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m09r
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81516-3|CAB04204.1| 370|Caenorhabditis elegans Hypothetical pr... 228 4e-60
Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical pr... 30 2.0
Z81078-5|CAB03078.2| 722|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z75535-4|CAA99828.2| 722|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z66499-5|CAE17941.1| 143|Caenorhabditis elegans Hypothetical pr... 28 6.0
AF098985-2|AAC67420.3| 166|Caenorhabditis elegans Hypothetical ... 28 6.0
>Z81516-3|CAB04204.1| 370|Caenorhabditis elegans Hypothetical
protein F26H9.5 protein.
Length = 370
Score = 228 bits (557), Expect = 4e-60
Identities = 107/225 (47%), Positives = 152/225 (67%), Gaps = 2/225 (0%)
Frame = -3
Query: 733 ASYVHICTNEPIHGVEFD-FIPDTKGVPLIADMSSNIMSKKVDVSKFGVIYAGAQKNIGT 557
A+Y++ C NE +HG+EF P++ VPL+AD+SSN M++ D GV++ GAQKN+G
Sbjct: 144 AAYLYYCANETVHGIEFTPTAPESHNVPLVADVSSNFMARPFDFKDHGVVFGGAQKNLGA 203
Query: 556 SGVALVIVREDLLNQALPTCPSLLDWTANYKQNSILNTPPMFAIYIMGRVLQWIQRNGGL 377
+G+ +VIVR+DL+ + PS+ + NS+ NTPP IY VL+WI+ GGL
Sbjct: 204 AGLTIVIVRKDLIGKQQAITPSVFSYKEMIANNSLYNTPPTGGIYTTNLVLKWIKSKGGL 263
Query: 376 EGMSQLATKKASLIYNTIEQSNGFYYAPVAKNVRSKMNVPFRIGCP-GDDALEKEFLKGA 200
+ + +L +K+ +IY+ I+ SNGFY+ V K RS MNV FRIG P G+D LE++FLKG+
Sbjct: 264 QAIYELNLQKSGMIYDIIDNSNGFYHCAVDKRYRSIMNVCFRIGGPSGNDELEEKFLKGS 323
Query: 199 ETLGLIQLKGHRDVGGIRASIYNAVTLEEVQALVQYMEEFYKKHS 65
+I LKGHR VGGIRAS+YNA+++EE Q L +M EF K H+
Sbjct: 324 IERNMISLKGHRSVGGIRASLYNAISVEETQVLATWMNEFQKLHN 368
>Z79598-4|CAB01868.2| 745|Caenorhabditis elegans Hypothetical
protein C44H4.4 protein.
Length = 745
Score = 31.5 bits (68), Expect = 0.64
Identities = 19/50 (38%), Positives = 28/50 (56%)
Frame = -3
Query: 721 HICTNEPIHGVEFDFIPDTKGVPLIADMSSNIMSKKVDVSKFGVIYAGAQ 572
HICT+ P+ +E D P TKG P + D+S N + +D K V+ A+
Sbjct: 605 HICTS-PVW-IEIDHGPQTKGFPFLHDVSFNGI-LAIDKDKVNVLVEPAE 651
>Z48544-2|CAA88437.1| 766|Caenorhabditis elegans Hypothetical
protein ZK945.3 protein.
Length = 766
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 670 DTKGVPLIADMSSNIMSKKVDVSKFGVIYAGAQKNI 563
D + + +A+ SN SKK ++G +YAG +N+
Sbjct: 566 DKREITFLAEGDSNPHSKKTQKDRYGQLYAGITENL 601
>Z81078-5|CAB03078.2| 722|Caenorhabditis elegans Hypothetical
protein F14B4.1 protein.
Length = 722
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -3
Query: 502 TC-PSLLDWTANYKQNSILNTPPMFAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNT 326
TC P + K ++ PM+ + G+ + I +G + + +K ++I
Sbjct: 299 TCDPRTYKLATDNKTCERIDQSPMWLFFAHGQSVWNISTDGKSFQLQRAGLQKTAMIDID 358
Query: 325 IEQSNGFYYAPVAKNVRSKMNV 260
+++ N YYA + NV +MN+
Sbjct: 359 VKE-NRLYYADIGANVIERMNI 379
>Z75535-4|CAA99828.2| 722|Caenorhabditis elegans Hypothetical
protein F14B4.1 protein.
Length = 722
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/82 (23%), Positives = 38/82 (46%), Gaps = 1/82 (1%)
Frame = -3
Query: 502 TC-PSLLDWTANYKQNSILNTPPMFAIYIMGRVLQWIQRNGGLEGMSQLATKKASLIYNT 326
TC P + K ++ PM+ + G+ + I +G + + +K ++I
Sbjct: 299 TCDPRTYKLATDNKTCERIDQSPMWLFFAHGQSVWNISTDGKSFQLQRAGLQKTAMIDID 358
Query: 325 IEQSNGFYYAPVAKNVRSKMNV 260
+++ N YYA + NV +MN+
Sbjct: 359 VKE-NRLYYADIGANVIERMNI 379
>Z66499-5|CAE17941.1| 143|Caenorhabditis elegans Hypothetical
protein T01B7.9 protein.
Length = 143
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +2
Query: 494 GTCR*SLIQKILSNNDKRYPRCTNILLSTSIYHPKL 601
G C + K L NN C N+ +S+S+Y P L
Sbjct: 59 GVCYGDICVKSLVNNHYVSKGCENLTISSSVYEPHL 94
>AF098985-2|AAC67420.3| 166|Caenorhabditis elegans Hypothetical
protein C08G5.2 protein.
Length = 166
Score = 28.3 bits (60), Expect = 6.0
Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 1/90 (1%)
Frame = -3
Query: 652 LIADMSSNIMSKKVDVSKFGVIYA-GAQKNIGTSGVALVIVREDLLNQALPTCPSLLDWT 476
+I D+ N+ + VD GV Y GA+ N+ +G V+ L + P P +DW
Sbjct: 43 IIKDLDLNLNTITVD----GVEYQLGAENNL--NGTPKVLATRQLEGRR-P--PMNVDWL 93
Query: 475 ANYKQNSILNTPPMFAIYIMGRVLQWIQRN 386
N I++ PP F + + + W N
Sbjct: 94 TIPNDNRIIDLPPSFEQFKIRMLSDWSPNN 123
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,613,945
Number of Sequences: 27780
Number of extensions: 389702
Number of successful extensions: 976
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 943
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -