Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m09f
         (602 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0398 + 3092577-3093857                                          102   2e-22
09_03_0003 + 11396076-11396386,11398803-11398869,11399194-113996...    29   2.1  
03_06_0756 - 36032432-36033871                                         28   5.0  
06_01_0746 + 5580755-5582119                                           27   8.7  
06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,426...    27   8.7  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    27   8.7  

>03_01_0398 + 3092577-3093857
          Length = 426

 Score =  102 bits (245), Expect = 2e-22
 Identities = 57/160 (35%), Positives = 83/160 (51%), Gaps = 2/160 (1%)
 Frame = +3

Query: 129 VFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDV 308
           V+NF AGPA LP  V +  + EL ++  SG+S++E SHR   +     + +  +R LL V
Sbjct: 65  VYNFAAGPATLPLSVLQRAQAELVDYRGSGMSIMEMSHRGKEFDAAIKKAEADLRALLAV 124

Query: 309 PDNYKVXXXXXXXXXXXXXVPLNL-ISRTGTADYVVTGAWSXXXXXXXXXYGKVNLVLPP 485
           PD ++V              PLNL  S +  AD+VV+G+WS         +   ++    
Sbjct: 125 PDTHEVLFLQGGATSQFAAAPLNLCASPSDPADFVVSGSWSDKAFKEAKKFSAASVAWSG 184

Query: 486 TD-KYEDIPDQTKWNLDPNASYVHICTNETIHGVEFDFIP 602
            D KY  +P       +P A ++HIC+NETIHGVEF   P
Sbjct: 185 KDGKYTSLPPFDAIEQNPEARFLHICSNETIHGVEFKDYP 224


>09_03_0003 +
           11396076-11396386,11398803-11398869,11399194-11399698,
           11400903-11401038,11401186-11401257,11401891-11401923,
           11401924-11402047,11402387-11402437,11403437-11403563,
           11404230-11404298,11404369-11404486,11404755-11405151
          Length = 669

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +3

Query: 471 LVLPPTDKYEDIP-DQTKWNLDPNASYVHICTNETI 575
           L+LPP  +Y D P D+  W    ++  ++I TN+TI
Sbjct: 120 LLLPPFQRYPDDPYDRLWWPWQGSSRLLNISTNQTI 155


>03_06_0756 - 36032432-36033871
          Length = 479

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = -2

Query: 505 MSSYLSVGGSTKFTFPYFFASLAALADHAPVT 410
           + SYLS  G    T P  FAS  ALA H P+T
Sbjct: 162 LKSYLSAQG---VTLPTLFASALALALHVPLT 190


>06_01_0746 + 5580755-5582119
          Length = 454

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 114 VKMSKVFNFGAGPAKLPEEVYEIIKNELTN 203
           ++ S + + GA    LPE+VYE +K E  +
Sbjct: 317 LRSSTIIDSGASITTLPEDVYEAVKAEFVS 346


>06_01_0591 + 4261483-4261631,4261837-4262007,4262127-4262226,
            4263151-4263315,4263416-4263544,4263758-4263858,
            4264527-4264596,4265080-4265331,4265828-4265897,
            4266281-4266341,4266916-4267003,4267746-4267830,
            4268168-4268234,4268442-4268559,4268843-4268923,
            4269022-4269267,4269670-4269771,4269847-4269914,
            4270040-4270171,4270283-4270430,4270504-4270790,
            4270920-4271067,4271156-4271331,4271407-4271518,
            4271614-4271667,4273134-4273244,4273317-4273478,
            4273627-4273814,4273948-4274137,4274297-4274464,
            4274832-4274912
          Length = 1359

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/52 (26%), Positives = 29/52 (55%)
 Frame = +3

Query: 114  VKMSKVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLN 269
            +K SK+       A +  +   +++N ++  E  G+++L  +HR ST MK++
Sbjct: 1273 LKSSKILCLDECTANVDNQTASLLQNTISA-ECKGMTVLTIAHRISTVMKMD 1323


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +3

Query: 486 TDKYEDIPDQTKWNLDPNASY 548
           TDK   + D  KW+LDP  +Y
Sbjct: 893 TDKSTSLDDSKKWHLDPAKTY 913


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,544,130
Number of Sequences: 37544
Number of extensions: 267113
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1431112012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)