Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m09f
         (602 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)              91   8e-19
SB_28618| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)               28   5.1  
SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)               28   6.7  
SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)          27   8.8  

>SB_30238| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 208

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 37/65 (56%), Positives = 47/65 (72%)
 Frame = +3

Query: 393 GTADYVVTGAWSXXXXXXXXXYGKVNLVLPPTDKYEDIPDQTKWNLDPNASYVHICTNET 572
           G+ADY+VTGAWS         YGKVNLVLP T  Y+ IPD ++W L+P+ASYV+ C NET
Sbjct: 42  GSADYIVTGAWSAKAVKEAEKYGKVNLVLPKTSTYDSIPDPSQWTLNPDASYVYYCENET 101

Query: 573 IHGVE 587
           +H +E
Sbjct: 102 VHEME 106



 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 19/36 (52%), Positives = 24/36 (66%)
 Frame = +3

Query: 126 KVFNFGAGPAKLPEEVYEIIKNELTNFENSGISLLE 233
           KV NF  GPAKLPE V +  + E  N+ N GIS++E
Sbjct: 5   KVINFAPGPAKLPEVVLKKAQEEFLNYGNLGISVME 40


>SB_28618| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -3

Query: 393 QFWILSLKEQLQIDQDPHQLKTAL-CSCPVHLISFAQHP 280
           +F  +S+ +  ++D  PHQ  TAL  S P  LI  + HP
Sbjct: 7   EFPTISISDLTELDLQPHQTPTALENSNPSPLIPASHHP 45


>SB_38059| Best HMM Match : Zfx_Zfy_act (HMM E-Value=2.6)
          Length = 722

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +3

Query: 156 KLPE-EVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPDNYKV 326
           K PE + +   ++   N+E    ++ +T     T ++LN EI D V+N  +   NY++
Sbjct: 197 KEPEYDTFNNFEDHQLNYEIMSEAMHDTDGPQFTDVQLNYEIMDKVKNNEETHPNYEI 254


>SB_51314| Best HMM Match : FAD_binding_7 (HMM E-Value=0)
          Length = 524

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +3

Query: 252 TYMKLNVEIQDVVRNLLDVPDNYK 323
           T  +  VE Q  VRNL+D+P N K
Sbjct: 165 TQFRKGVENQSTVRNLIDMPKNLK 188


>SB_52342| Best HMM Match : ABC_tran (HMM E-Value=5.29999e-41)
          Length = 336

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -1

Query: 191 ILNNFIDFFW----QFSRSSAKIKHFRHFHLFI 105
           +LNN   F W    QF+  + ++K F H H +I
Sbjct: 21  LLNNIRSFLWITIQQFTSRTLQVKLFEHLHSYI 53


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,163,798
Number of Sequences: 59808
Number of extensions: 317901
Number of successful extensions: 607
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)