Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m09f
         (602 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical pr...   134   6e-32
AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical ...    29   1.9  
AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical...    27   7.8  

>Z81516-3|CAB04204.1|  370|Caenorhabditis elegans Hypothetical
           protein F26H9.5 protein.
          Length = 370

 Score =  134 bits (323), Expect = 6e-32
 Identities = 64/152 (42%), Positives = 86/152 (56%)
 Frame = +3

Query: 135 NFGAGPAKLPEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLLDVPD 314
           NF AGPAKLPEEV   ++ E  NF N G+S++E SHRS  +  L  E   ++R L++VPD
Sbjct: 9   NFAAGPAKLPEEVLLKMQEEQLNFNNLGVSVIEMSHRSKEFGALLNETISLIRELMNVPD 68

Query: 315 NYKVXXXXXXXXXXXXXVPLNLISRTGTADYVVTGAWSXXXXXXXXXYGKVNLVLPPTDK 494
           N+++             +PLNL      ADY+VTGAWS         Y  V  V  P+  
Sbjct: 69  NFEILFMQGGGTGQFAAIPLNLKGDHEHADYIVTGAWSSKAADEAGKYINVKKVFQPSKP 128

Query: 495 YEDIPDQTKWNLDPNASYVHICTNETIHGVEF 590
           Y  +PDQ  W  D  A+Y++ C NET+HG+EF
Sbjct: 129 YVTVPDQENWVHDEKAAYLYYCANETVHGIEF 160


>AF003150-1|AAB54215.1|  997|Caenorhabditis elegans Hypothetical
           protein T05E7.3 protein.
          Length = 997

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = -1

Query: 158 FSRSSAKIKHFRHFHLFIYLINSYTTLFYQTTLSFSDVSRYDVVLS 21
           F+RSS +++      LFI + N   + F +++LS+ DV     VLS
Sbjct: 717 FARSSGELEKNYIAELFIKITNPKASRFSESSLSWKDVKMSKTVLS 762


>AL032623-13|CAA21504.1|  465|Caenorhabditis elegans Hypothetical
           protein Y43F8B.13 protein.
          Length = 465

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
 Frame = -1

Query: 224 TNSRIFKICQFILNNFIDFFWQFSRSSAKIKHFRHFHLFIYLINSYTTLFYQTTL----S 57
           ++S IF     +L++F    +Q    S  I H +H H   Y +   T  F Q+ L    S
Sbjct: 239 SHSDIFNYMDEVLSHFPCNLFQRGVLSKAINHAKHCHKNFYALGFLTDKFRQSILRSMRS 298

Query: 56  FSDVSRYD 33
            +D   YD
Sbjct: 299 MADHELYD 306


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,160,547
Number of Sequences: 27780
Number of extensions: 258002
Number of successful extensions: 740
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 740
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1289949676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)