Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m09f
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     28   0.081
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   2.3  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   2.3  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    22   5.3  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 27.9 bits (59), Expect = 0.081
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +3

Query: 162 PEEVYEIIKNELTNFENSGISLLETSHRSSTYMKLNVEIQDVVRNLL 302
           P + Y++  N +TNF+NS I  L+  H   T  K+   + +  +N L
Sbjct: 152 PFKEYQMNGNNITNFKNSNIFQLK-QHMRDTMNKIAETLDEDTKNKL 197


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 114  VKMSKVFNFGAGPAKLPEEVYEI 182
            V + +  N G GP K+PE   +I
Sbjct: 1672 VALQQAANTGGGPDKIPETAEDI 1694


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 114  VKMSKVFNFGAGPAKLPEEVYEI 182
            V + +  N G GP K+PE   +I
Sbjct: 1668 VALQQAANTGGGPDKIPETAEDI 1690


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 543 SYVHICTNETIHGVEF 590
           +Y+++  N T+H VEF
Sbjct: 360 NYLYLTYNGTVHDVEF 375


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 156,807
Number of Sequences: 438
Number of extensions: 3040
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)