Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m08r
(741 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g05030.1 68415.m00525 hypothetical protein 32 0.35
At2g36250.2 68415.m04450 chloroplast division protein FtsZ (FtsZ... 29 2.4
At2g36250.1 68415.m04449 chloroplast division protein FtsZ (FtsZ... 29 2.4
At2g21860.1 68415.m02597 violaxanthin de-epoxidase-related conta... 29 2.4
At5g47140.1 68418.m05811 zinc finger (GATA type) family protein ... 29 4.3
At5g03360.1 68418.m00289 DC1 domain-containing protein contains ... 29 4.3
At4g17570.1 68417.m02627 zinc finger (GATA type) family protein 29 4.3
At5g01840.1 68418.m00103 ovate family protein 59% similar to ova... 28 5.7
At2g48020.2 68415.m06011 sugar transporter, putative similar to ... 28 5.7
At2g48020.1 68415.m06010 sugar transporter, putative similar to ... 28 5.7
At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to ... 28 7.5
At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein con... 28 7.5
At2g17240.1 68415.m01991 expressed protein 28 7.5
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 28 7.5
At5g67300.1 68418.m08486 myb family transcription factor contain... 27 9.9
At5g01280.1 68418.m00037 expressed protein 27 9.9
At3g24506.1 68416.m03075 expressed protein 27 9.9
>At2g05030.1 68415.m00525 hypothetical protein
Length = 205
Score = 32.3 bits (70), Expect = 0.35
Identities = 16/41 (39%), Positives = 23/41 (56%)
Frame = +3
Query: 72 SDGQRSTVPKSRHQRGRGCGGEDHRSHPGTGRDHRRPKHQS 194
S G+RS +P+S G +DHR G +DHRR + Q+
Sbjct: 65 SSGERS-LPRSSTSTDDRVGYQDHRRDQGQDQDHRRDQQQN 104
>At2g36250.2 68415.m04450 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -1
Query: 375 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI---NRAITA 205
A +NYN +V+ G G+ ++ ++ V+ W +N + R P+ NR
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIG 171
Query: 204 NMLCSGVLDVGGRDQ 160
L G L GG +
Sbjct: 172 KELTRG-LGAGGNPE 185
>At2g36250.1 68415.m04449 chloroplast division protein FtsZ
(FtsZ2-1) identical to chloroplast division protein
AtFtsZ2-1 [Arabidopsis thaliana] GI:15636809, plastid
division protein FtsZ [Arabidopsis thaliana] GI:14195704
Length = 478
Score = 29.5 bits (63), Expect = 2.4
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Frame = -1
Query: 375 AGANYNLGDNQVVWAAGWGATSLGGSNSEQLRHVQVWTINQNACVQRYRPI---NRAITA 205
A +NYN +V+ G G+ ++ ++ V+ W +N + R P+ NR
Sbjct: 112 APSNYNEARIKVIGVGGGGSNAVNRMIESEMSGVEFWIVNTDIQAMRMSPVLPDNRLQIG 171
Query: 204 NMLCSGVLDVGGRDQ 160
L G L GG +
Sbjct: 172 KELTRG-LGAGGNPE 185
>At2g21860.1 68415.m02597 violaxanthin de-epoxidase-related contains
weak similarity to violaxanthin de-epoxidase precursor
gi|1438875|gb|AAC49373
Length = 522
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -1
Query: 63 VNVRVSRFTSWIQSNSKNVKN 1
V V S +WIQ+NSKNVKN
Sbjct: 142 VAVNNSESVNWIQTNSKNVKN 162
>At5g47140.1 68418.m05811 zinc finger (GATA type) family protein
contains Pfam:PF00320 GATA zinc finger domain
Length = 470
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 68 GKRRSAQYCPQEQTPTRTRLWRRGPPESP 154
GK+ +C TP LWR GPPE P
Sbjct: 2 GKQGPCYHCGVTSTP----LWRNGPPEKP 26
>At5g03360.1 68418.m00289 DC1 domain-containing protein contains Pfam
profile PF03107: DC1 domain
Length = 1610
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +3
Query: 108 HQRGRGCGGEDHRSHPGTGRDHRRPKH 188
H R RGC GE+H+ + D + P H
Sbjct: 1223 HFRCRGCNGENHKGYEQAPVDVKHPLH 1249
>At4g17570.1 68417.m02627 zinc finger (GATA type) family protein
Length = 510
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/29 (44%), Positives = 15/29 (51%)
Frame = +2
Query: 68 GKRRSAQYCPQEQTPTRTRLWRRGPPESP 154
GK+ +C TP LWR GPPE P
Sbjct: 2 GKQGPCYHCGVTNTP----LWRNGPPEKP 26
>At5g01840.1 68418.m00103 ovate family protein 59% similar to ovate
protein (GI:23429649) [Lycopersicon esculentum];
contains TIGRFAM TIGR01568 : uncharacterized
plant-specific domain TIGR01568
Length = 270
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/60 (28%), Positives = 25/60 (41%)
Frame = +2
Query: 11 FFELDWIQEVKRETRTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTP 190
F++L + + K++ P S + TPT T PP P H S+ P S P
Sbjct: 18 FYKLRDMSKSKKKNLQSQPNSTTSKKKHHAVPTPTSTTPLSPRPPRRPSHSSKAPPSHPP 77
>At2g48020.2 68415.m06011 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 729 PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 616
P N + + GG T +N + G A+ YT+N+ W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426
>At2g48020.1 68415.m06010 sugar transporter, putative similar to
ERD6 protein {Arabidopsis thaliana} GI:3123712,
sugar-porter family proteins 1 and 2 [Arabidopsis
thaliana] GI:14585699, GI:14585701; contains Pfam
profile PF00083: major facilitator superfamily protein
Length = 463
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = -1
Query: 729 PTNPQRIIGGSTTNINQYPGIAALLYTWNWNQWWQSCG 616
P N + + GG T +N + G A+ YT+N+ W S G
Sbjct: 390 PINIKGVAGGMATLVNWF-GAWAVSYTFNFLMSWSSYG 426
>At3g56170.1 68416.m06243 Ca(2+)-dependent nuclease identical to
Ca(2+)-dependent nuclease [Arabidopsis thaliana]
GI:7684292; supporting cDNA gi|7684291|dbj|D84226.1|
Length = 323
Score = 27.9 bits (59), Expect = 7.5
Identities = 11/33 (33%), Positives = 12/33 (36%)
Frame = +2
Query: 71 KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSR 169
KR E R LW PE PW W +
Sbjct: 285 KRAELAKWENEARQKRVGLWASSNPEKPWEWRK 317
>At3g18080.1 68416.m02299 glycosyl hydrolase family 1 protein
contains Pfam PF00232 : Glycosyl hydrolase family 1
domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
similar to beta-glucosidase BGQ60 precursor GB:A57512
[Hordeum vulgare]; similar to beta-mannosidase enzyme
(GI:17226270) [Lycopersicon esculentum]
Length = 512
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +3
Query: 318 HPNQQPKQLGYHQDCN 365
HP +PK LGY QD N
Sbjct: 356 HPTTKPKDLGYQQDWN 371
>At2g17240.1 68415.m01991 expressed protein
Length = 140
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/41 (29%), Positives = 17/41 (41%)
Frame = +2
Query: 71 KRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTSKTPE 193
+R Q P +L RR P + P W RP + P+
Sbjct: 50 RRNRNQLQVVSMAPEEEKLTRRNPLDFPIEWERPKPGRRPD 90
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = +3
Query: 27 GSKR*NGKRER*HQGSDGQRSTVPKSRHQ-RGRGCGGEDHRSHPGTGRDHRR 179
G + +G+ + +G G R R RGRG GG+ R + G G H R
Sbjct: 39 GDRGYSGRGDGHGRGGGGDRGRGYSGRGDGRGRGGGGDRGRGYSGRGDGHGR 90
>At5g67300.1 68418.m08486 myb family transcription factor contains
PFAM profile: myb DNA binding domain PF00249
Length = 305
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +3
Query: 120 RGCGGEDHRSHPGTGRDHRRPK 185
R CGG DHR + G+ DHR K
Sbjct: 105 RKCGGYDHRGYDGS-EDHRPVK 125
>At5g01280.1 68418.m00037 expressed protein
Length = 460
Score = 27.5 bits (58), Expect = 9.9
Identities = 15/43 (34%), Positives = 18/43 (41%)
Frame = +2
Query: 53 RTLTPGKRRSAQYCPQEQTPTRTRLWRRGPPESPWHWSRPPTS 181
++ TP KR S T TR L S WSRP +S
Sbjct: 103 KSKTPAKRPSTPTSRATSTTTRATLTSSSTTSSTRSWSRPSSS 145
>At3g24506.1 68416.m03075 expressed protein
Length = 149
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = +2
Query: 110 PTRTRLWRRGPPESPWHWSRPPTSKTPE 193
P +L RR P + P W RP + P+
Sbjct: 71 PEEEKLTRRNPLDFPIEWERPKPGRRPD 98
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.315 0.130 0.372
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,130,838
Number of Sequences: 28952
Number of extensions: 422072
Number of successful extensions: 1335
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1257
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1633819784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
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