Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m07r
         (452 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    25   4.1  
SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces pombe...    25   5.4  
SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase Gut2|Schi...    25   7.2  
SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate |Schizos...    25   7.2  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    25   7.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   7.2  

>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 344 FYCPPSVAPTSHCTDQHRLYAFVNKTILVNSSNK 243
           +YCP  + P S  + Q+ ++ +    + +NS  K
Sbjct: 305 YYCPSMIYPLSKSSFQYIIFHYAAGLLFINSDFK 338


>SPBC20F10.05 |||DuF1740 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 972

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 339 LPSFGRSDESLYGPAPLVCFCK 274
           +P + RS  S+YG APL+   K
Sbjct: 78  VPKYHRSSSSVYGSAPLLRIVK 99


>SPCC1223.03c |gut2||glycerol-3-phosphate dehydrogenase
           Gut2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 649

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -1

Query: 359 VMLKLFYCPPSVAPTSHCTDQHRLYAFV 276
           V+L  +YCPP++      T  +R+  F+
Sbjct: 319 VVLPEYYCPPNIGILDPSTSDNRVMFFL 346


>SPCC4B3.10c |ipk1||inositol 1,3,4,5,6-pentakisphosphate
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 640

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -2

Query: 121 LVNKFHRXSLICFRMSY*IYXKWDCFIGSDISQPLLARGS 2
           L+  F+   L  FR  + I   WDCF   DI Q  L   S
Sbjct: 204 LMKHFYCLQLQMFRKMHNIVRPWDCF-QDDIPQTWLVEFS 242


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -1

Query: 374  SLLYFVMLKLFYC 336
            SLLYFV   LFYC
Sbjct: 1013 SLLYFVRALLFYC 1025


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -1

Query: 161  TRVICQNMF*NIXFSK*ISSTFTDLFQNVV 72
            T+++C  ++ N+   +    TF DL  NVV
Sbjct: 4080 TKILCNILYRNVHLEEFSWGTFKDLLLNVV 4109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,355,572
Number of Sequences: 5004
Number of extensions: 21654
Number of successful extensions: 39
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)