Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m07r
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1125 + 31085106-31085714                                         29   1.3  
01_01_0082 + 625198-625719                                             29   1.3  
02_02_0653 - 12655787-12656311                                         27   5.3  
12_02_0652 - 21527768-21528328,21528980-21529738,21530151-215302...    27   7.1  

>04_04_1125 + 31085106-31085714
          Length = 202

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -1

Query: 449 LAARCRTRCGTSCACTSPRAPPC 381
           LA    T CG++C  T P  PPC
Sbjct: 22  LAPAAATWCGSNCPTTKPPPPPC 44


>01_01_0082 + 625198-625719
          Length = 173

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -1

Query: 425 CGTSCACTSPRAPP-CPLSLLYFVMLKLFYCPPSVAPTSH 309
           CGT+C   SP  P   P  + Y     ++Y PPS  P ++
Sbjct: 44  CGTTCTYASPPPPDVLPTPVYYPPPPPVYYPPPSPPPVAY 83


>02_02_0653 - 12655787-12656311
          Length = 174

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 419 TSCACTSPRAPPCPLSLLYFVMLK 348
           +S + TS R PPCPL + + V+ +
Sbjct: 110 SSPSTTSGRGPPCPLCMYFLVLAR 133


>12_02_0652 -
           21527768-21528328,21528980-21529738,21530151-21530216,
           21530550-21530598,21530717-21530817,21531469-21531540,
           21531630-21531746,21531870-21531959,21532224-21532319,
           21532429-21532482,21533210-21533290,21533382-21533581,
           21533677-21533804,21533943-21533995,21534312-21534374
          Length = 829

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = +1

Query: 220 IYVTYINYLLEELTKIVLFTKAYKRCWSVQ*LVGATEGG 336
           + +TY+    EE+ KIV+F   +++ +S+    G ++GG
Sbjct: 183 LLLTYLTRDAEEIQKIVVFEGVFEKIFSIIREEGYSDGG 221


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,285,097
Number of Sequences: 37544
Number of extensions: 130147
Number of successful extensions: 346
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 345
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)