Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fmgV11m07r
(452 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.8
SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.2
SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3) 27 5.5
SB_25239| Best HMM Match : PKD (HMM E-Value=5.2) 27 5.5
SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23) 27 9.6
SB_8931| Best HMM Match : MFS_1 (HMM E-Value=0.012) 27 9.6
SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08) 27 9.6
SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038) 27 9.6
SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_11985| Best HMM Match : hATC (HMM E-Value=0.022) 27 9.6
>SB_38622| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3824
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = -1
Query: 428 RCGTSCACTSPRAPPCPLSLLYFVMLKLFYCPPSVAPTSHCTD 300
RC +SC C+ R P L + L +C P V HC +
Sbjct: 3606 RCRSSCDCSVLRNPMFVLCTAMTSLAALGHCMPIVHLAKHCAE 3648
>SB_52216| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 27.9 bits (59), Expect = 4.2
Identities = 16/55 (29%), Positives = 22/55 (40%)
Frame = -1
Query: 443 ARCRTRCGTSCACTSPRAPPCPLSLLYFVMLKLFYCPPSVAPTSHCTDQHRLYAF 279
A C T + CT CP + YCP + PT++C +R AF
Sbjct: 923 AYCLTAYHPTANCTKAY---CPTAYCPTANRPTAYCPTAYLPTAYCPTAYRQTAF 974
>SB_44362| Best HMM Match : Transposase_24 (HMM E-Value=6.3)
Length = 306
Score = 27.5 bits (58), Expect = 5.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 302 PYSDSSERPKEGNKII*ALRSTIVRAG 382
PY D + P+EG I+ +R+TI R+G
Sbjct: 42 PYLDEALSPREGGSIV-PIRNTIFRSG 67
>SB_25239| Best HMM Match : PKD (HMM E-Value=5.2)
Length = 193
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/34 (44%), Positives = 17/34 (50%)
Frame = +1
Query: 202 YNYLISIYVTYINYLLEELTKIVLFTKAYKRCWS 303
YNYL SI VTYI + T + L K WS
Sbjct: 105 YNYLWSIPVTYITSRQSQKTTLALDGKVGSITWS 138
>SB_4238| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1288
Score = 27.1 bits (57), Expect = 7.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 383 CPLSLLYFVMLKLFYCPPSVAPTSHC 306
C S++ FV+L +F CPP+ HC
Sbjct: 1215 CNTSVINFVVLNIFRCPPAYY-GKHC 1239
>SB_15991| Best HMM Match : SCP (HMM E-Value=2.3e-23)
Length = 1189
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/58 (25%), Positives = 25/58 (43%)
Frame = -1
Query: 437 CRTRCGTSCACTSPRAPPCPLSLLYFVMLKLFYCPPSVAPTSHCTDQHRLYAFVNKTI 264
C +C C T+P CP S + C P TS C +H++ A +++ +
Sbjct: 942 CYPQCTPECCSTTPPTAQCPSSCAW-------TCAPDC--TSECCARHKVSAALSRPL 990
>SB_8931| Best HMM Match : MFS_1 (HMM E-Value=0.012)
Length = 266
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -1
Query: 428 RCGTSCACTSPRAPPCPLSLLYFVMLKLFYCPPSVAPTSHCTD 300
RC + C C+ R P L + L +C P V HC +
Sbjct: 154 RCRSLCDCSVLRNPMFVLCTAMTSLAALGHCMPIVHLAKHCAE 196
>SB_48999| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-08)
Length = 1158
Score = 26.6 bits (56), Expect = 9.6
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = -1
Query: 332 PSVAPTSHCTDQHRLYAFVNKT 267
PSVAP + H Y + NKT
Sbjct: 692 PSVAPAAQSPPSHTFYPYTNKT 713
>SB_40436| Best HMM Match : EGF_CA (HMM E-Value=0.0038)
Length = 676
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -1
Query: 344 FYCPPSVA---PTSHCTDQHRLYAFVNKTILVN 255
+ CP SV PT H + R++ F+N ++N
Sbjct: 555 YMCPVSVQWLKPTQHSVEALRIFPFLNDNCIIN 587
>SB_34202| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 717
Score = 26.6 bits (56), Expect = 9.6
Identities = 13/35 (37%), Positives = 15/35 (42%)
Frame = -1
Query: 389 PPCPLSLLYFVMLKLFYCPPSVAPTSHCTDQHRLY 285
PP PLS L+ V + Y PP T C Y
Sbjct: 8 PPFPLSTLFCVQYQERYKPPFPLSTLSCVQYQERY 42
>SB_11985| Best HMM Match : hATC (HMM E-Value=0.022)
Length = 865
Score = 26.6 bits (56), Expect = 9.6
Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Frame = -1
Query: 344 FYCPPSVA---PTSHCTDQHRLYAFVNKTILVN 255
+ CP SV PT H + R++ F+N ++N
Sbjct: 552 YMCPVSVQWLKPTQHSVEALRIFPFLNDNCIIN 584
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,961,633
Number of Sequences: 59808
Number of extensions: 151696
Number of successful extensions: 438
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 437
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 908427626
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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