Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fmgV11m07r
         (452 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    28   3.7  
AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical...    27   6.4  
AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase...    27   6.4  

>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 13/47 (27%), Positives = 17/47 (36%)
 Frame = -1

Query: 437 CRTRCGTSCACTSPRAPPCPLSLLYFVMLKLFYCPPSVAPTSHCTDQ 297
           C++ C  SC  TS   PP P   +     +         P  HC  Q
Sbjct: 105 CQSSCQQSCQTTSCYTPPAPAQCMPQCQQQCSQQCVQTQPVQHCQSQ 151


>AL110484-28|CAB54395.2|  419|Caenorhabditis elegans Hypothetical
           protein Y38E10A.4 protein.
          Length = 419

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -1

Query: 437 CRTRCGTSCACTSPRAPPCPL 375
           C+   GTSC    P  PP P+
Sbjct: 278 CKRPAGTSCPWVEPETPPTPV 298


>AF025462-2|AAN72422.1| 1075|Caenorhabditis elegans Phospholipase c
           like protein 1,isoform a protein.
          Length = 1075

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = -1

Query: 419 TSCACTSPRAPPCPLSLLYFVMLKLFY 339
           +SC C  P    CP+  L+++   L++
Sbjct: 2   SSCVCLEPEEQLCPIFGLHYIFFTLYF 28


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,457,372
Number of Sequences: 27780
Number of extensions: 122385
Number of successful extensions: 323
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 323
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 799252350
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)